教學
變動環境中的珊瑚礁生態系、環境生態與生物多樣性、海洋光合作用、R在生態資料分析之應用
著作
A. Scientific papers
- Lin YV, Chateau PA, Nozawa Y, Wei CL, Wunderlich RF, Denis V.* (2024) Drivers of coastal benthic communities in a complex environmental setting. Marine Pollution Bulletin, 203, 116462.
- Ribas-Deulofeu L, Loubeyres M, Denis V*, De Palmas S, Hwang SJ, Woo S, Song JI, Chen CA* (2023) Jeju Island: a sentinel for tracking ocean warming impacts on high-latitude benthic communities. CORAL REEFS, DOI10.1007/s00338-023-02400-9.
- Cannon SE*, Donner SD, Liu A, Espinosa PCG, Baird AH, Baum JK, Bauman AG, Beger M, Benkwitt CE, Birt MJ, Chancerelle Y, Cinner JE, Crane NL, Denis V, Depczynski M, Fadli N, Fenner D, Fulton CJ, Golbuu Y, Graham NAJ, Guest J, Harrison HB, Hobbs JPA, Hoey AS, Holmes TH, Houk P, Januchowski-Hartley FA, Jompa J, Kuo C Y, Limmon GV, Lin YTV, McClanahan TR, Muenzel D, Paddack MJ, Planes S, Pratchett MS, Radford B, Reimer JD, Richards ZT, Ross CL, Jr JR, Sommer B, Williams GJ, Wilson SK (2023, Apr) Macroalgae exhibit diverse responses to human disturbances on coral reefs. GLOBAL CHANGE BIOLOGY, DOI10.1111/gcb.16694.
- Hsu THT, Chen WJ, Denis V* (2023 Apr) Navigating the scales of diversity in subtropical and coastal fish assemblages ascertained by eDNA and visual surveys. ECOLOGICAL INDICATORS, 148, 110044.
- Parkinson JE*, Tang SL, Denis V (2022, Jul) Editorial: Variance matters: Individual differences and their consequences for natural selection within and among coral holobionts. FRONTIERS IN ECOLOGY AND EVOLUTION, 10, 977844.
- Lai TY, Denis V, Nozawa Y* (2022, Jul) Timing of final oocyte maturation in Acropora and merulinid corals. CORAL REEFS, 41(5), 1379-1387.
- Lin YV, Hsiao WV, Chen WJ, Denis V* (2022, Jun) Habitat change and its consequences on reef fish specialization in biogeographic transition zones. JOURNAL OF BIOGEOGRAPHY, 49(8), 1549-1561.
- Sturaro N, Hsieh YE, Chen Q, Wang PL, Denis V* (2021, Dec) Trophic plasticity of mixotrophic corals under contrasting environments. FUNCTIONAL ECOLOGY, 35(12), 2841-2855.
- Soto D, De Palmas S, Ho MJ, Denis V, Allen Chen CL* (2021, Nov) A molecular census of early-life stage scleractinian corals in shallow and mesophotic zones. ECOLOGY AND EVOLUTION, 11(21), 14573-14584.
- Carpenter GE*, Denis V, Fan TY, Doo SS (2021, Oct) Effects of thermal history on the responses to thermal stress of a large benthic foraminifera, Calcarina gaudichaudii. CORAL REEFS, 40, 1879–1888.
- de Palmas, S., Soto, D., Ho, M. J., Denis, V.*, Chen, C. A.* (2021, Oct) Strong horizontal and vertical connectivity in the coral Pocillopora verrucosa from Ludao, Taiwan, a small oceanic island. PLOS ONE, 16(10), e0258181.
- De Palmas S, Denis V*, Soto D, Lin YV, Ho, MJ, Chen CA. (2021, Oct) Scleractinian diversity in the upper mesophotic zone of Ludao (Taiwan): a museum collection with new records from Taiwanese waters. MARINE BIODIVERSITY, 51(5), 80.
- Ribas-Deulofeu L, Chateau P, Denis V, Chen CA* (2021, Aug) Portraying Gradients of Structural Complexity in Coral Reefs Using Fine-Scale Depth Profiles. FRONTIERS IN MARINE SCIENCE, 8, 675853.
- Hsiao WV, Lin YV, Lin HT, Denis V* (2021, Aug) Learning from differences: Abiotic determinism of benthic communities in Northern Taiwan. MARINE ENVIRONMENTAL RESEARCH, 170, 105361.
- Ribas-Deulofeu L, Denis V, Chateau P, Chen CA* (2021, Jul) Impacts of heat stress and storm events on the benthic communities of Kenting National Park (Taiwan). PEERJ, 9, e11744. doi: 10.7717/peerj.11744
- Hsu THT, Carlu L, Hsieh YE, Lai TYA, Wang CW, Huang CY, Yang SH, Wang PL, Sturaro N, Denis V* (2020, Dec) Stranger Things: Organismal Traits of Two Octocorals Associated with Singular Symbiodiniaceae in a High-Latitude Coral Community From Northern Taiwan. FRONTIERS IN MARINE SCIENCE, 7, 606601. doi: 10.3389/fmars.2020.606601
- Maggioni D*, Arrigoni R, Seveso D, Galli P, Berumen ML, Denis V, Hoeksema BW, Huang DW, Manca F, Pica D, Puce S, Reimer JD, Montano S (2020, Oct) Evolution and biogeography of the Zanclea-Scleractinia symbiosis. CORAL REEFS, doi: 10.1007/s00338-020-02010-9.
- Denis V*, Fan TY, Hsiao WV, Hwang SJ, Lin YV, Nozawa Y (2020, May) Idea Paper: Tracking the distribution of accretive reef communities across the Kuroshio region. ECOLOGICAL RESEARCH, SI,35(4), 595-598. doi: 10.1111/1440-1703.12128
- Sturaro N, Hsieh YE, Chen Q, Wang P-L, Denis V* (2020, Apr) Toward a standardised protocol for the stable isotope analysis of scleractinian corals. RAPID COMMUNICATION IN MASS SPECTROMETRY 34(8), UNSP e8663. doi:10.1002/rcm.8663
- Boissin E*, Leung JK, Denis V, Bourmaud CAF, Gravier Bonnet-N (2020, Jan) Morpho-molecular delineation of structurally important reef species, the fire corals, Millepora spp, at Reunion Island, Southwestern IndianOcean. HYDROBIOLOGIA. 847, 1237-1255. doi: 10.1007/s10750-020-04179-0
- Kavousi J, Denis V, Sharp V, Reimer JD, Nakamura T, Parkinson JE* (2020, Jan) Unique combinations of coral host and algal symbiont genotypes reflect intraspecific variation in heat stress responses among colonies of the reef-building coral, Montipora digitata. MARINE BIOLOGY 167:23. doi:10.1007/s00227-019-3632-z
- Chen CJ, Chen WJ, Shikina S, Denis V, Chang CF* (2020, Jan) The plasticity of gonad development of sexual reproduction in a scleractinian coral, Porites lichen. GENERAL AND COMPARATIVE ENDOCRINOLOGY 285, 113270. doi:10.1016/j.ygcen.2019.113270
- Darling ES*, McClanahan TR, Maina J, Gurney GG, Graham NAJ, Januchowski-Hartley F, Cinner JE, Mora C, Hicks CH, Maire M, Puotinen P, Skirving JS, Adjeroud A, Ahmadia A, Arthur A, Bauman GB, Beger B, Berumen LB, Bigot B, Bouwmeester B, Brenier B, Bridge B, Brown B, Campbell JC, Cannon C, Cauvin C, Chen AC, Claudet C, Denis V, Donner D, Estradivari, Fadli F, Feary AF, Fenner F, Fox F, Franklin CF, Friedlander F, Gilmour G, Goiran G, Guest G, Hobbs J-AA, Hoey AS, Houk P, Johnson S, Jupiter S, Kayal M, Kuo CY, Lamb J, Lee MAC, Low J, Muthiga N, Muttaqin E, Nand Y, Nash KL, Nedlic O, Pandolfi JM, Pardede S, Patankar V, Penin L, Ribas-Deulofeu L, Richards Z, Roberts TE , Rodgers KS, Mohd Safuan CD, Sala E, Shedrawi G, Sin TS, Smallhorn-West P, Smith JE, Sommer B, Steinberg PD, Sutthacheep M, Tan CHJ, Williams GJ, Wilson S, Yeemin T, Bruno JF, Fortin M-J, Krkosek M, Mouillot D (2019, Aug) Social-environmental drivers inform strategic management of coral reefs in the Anthropocene. NATURE ECOLOGY AND EVOLUTION 3, 1341-1350. doi:10.1038/s41559-019-0953-8
- Lin YV, Denis V* (2019, Jul) Acknowledging differences: number, characteristics, and distribution of marine benthic communities along Taiwan coast. ECOSPHERE 10(7), e02803. doi:10.1002/ecs2.2803
- Carballo-Bolaños R, Denis V, Huang YY, Keshavmurthy S, Chen CA* (2019, Jun) Temporal variation and photochemical efficiency of species in Symbiodinaceae associated with coral Leptoria phrygia (Scleractinia; Merulinidae) exposed to contrasting temperature regimes. PLOS ONE, 14(6), e0218801. doi:10.1371/journal.pone.0218801
- Kaboth-Bahr S*, Denis V, Su CC, O’regan M, Gyllencreutz R, Jakobsson M, Löwemark L (2019, Apr) Deciphering ∼45.000 years of Arctic Ocean lithostratigraphic variability through multivariate statistical analysis. QUATERNARY INTERNATIONAL, 514, 141-151. doi:10.1016/j.quaint.2018.11.043
- Denis V*, Lin YTV, Ho MJ (2019, Feb) A new association between goblet worms (Entoprocta) and xeniid corals (Cnidaria). MARINE BIODIVERSITY 49(1), 487-493. doi:10.1007/s12526-017-0766-4
- Denis V*, Chen JW, Chen Q, Hsieh YE, Lin YV, Wang CW, Wang HY, Sturaro N (2019, Jan) Biogeography of functional trait diversity in the Taiwanese reef fish fauna. ECOLOGY & EVOLUTION 9(1), 522-532. doi:10.1002/ece3.4771
- Yang SH, Tandon K, Lu CY, Wada N, Shih CJ, Hsiao SSY, Jane WN, Lee TC, Yang CM, Liu CT, Denis V, Wu YT, Wang LT, Huang L, Lee DC, Wu YW, Yamashiro H, Tang SL* (2019, Jan) Metagenomic, phylogenetic, and functional characterization of predominant endolithic green sulfur bacteria in the coral Isopora palifera. MICROBIOME 7, 3. doi:10.1186/s40168-018-0616-z
- De Palmas S, Soto D, Denis V*, Ho MJ, Chen CA* (2018, Oct) Molecular assessment of Pocillopora verrucosa (Scleractinia; Pocilloporidae) distribution along a depth gradient in Ludao, Taiwan. PEERJ 6, e5797. doi:10.7717/peerj.5797
- Soto D, De Palmas S, Ho MJ, Denis V*, Chen CA* (2018, Aug) Spatial variation in the morphological traits of Pocillopora verrucosa along a depth gradient in Taiwan. PLOS ONE 13(8), e0202586. doi:10.1371/journal.pone.0202586
- Denis V*, Ribas-Deulofeu L, Sturaro N, Kuo CY, Chen CA (2017, Aug) A functional approach to the structural complexity of coral assemblages based on colony morphological features. SCIENTIFIC REPORTS 7, 9849. doi:10.1038/s41598-017-10334-w
- White KN*, Weinstein DK, Ohara T, Denis V, Montenegro J, Reimer JD (2017) Shifting communities after typhoon damage on an upper mesophotic reef in Okinawa, Japan. PEERJ 5, e3573. doi:10.7717/peerj.3573
- Woo S, Yang SH, Chen HJ, Tseng YF, Hwang SJ, De Palmas S, Denis V, Imahara Y, Iwase F, Yum S, Tang SL* (2017, Aug) Geographical variations in bacterial communities associated with soft coral Scleronephthya gracillimum. PLOS ONE 12(8), e0183663. doi:10.1371/journal.pone.0183663
- Ribas-Deulofeu Lǂ, Denis V*ǂ, De Palmas S, Kuo CY, Hsieh HJ, Chen CA* (2016, Aug) Structure of benthic communities along the Taiwan latitudinal gradient. PLOS ONE 11(8), e0160601. doi:10.1371/journal.pone.0160601
- Denis V, De Palmas S, Benzoni F, Chen CA* (2015, Dec) Extension of the known distribution and depth range of the scleractinian coral Psammocora stellata: first record from a Taiwanese mesophotic reef. MARINE BIODIVERSITY 45(4), 619-620. doi:10.1007/s12526-014-0299-z
- De Palmas S, Denis V, Ribas-Deulofeu L, Loubeyres M, Woo S, Hwang SJ, Song JI, Chen CA* (2015, Sep) Symbiodinium associated with the high-latitude scleractinian corals from Jeju Island, South Korea. CORAL REEFS 34(3), 919-925. doi:10.1007/s00338-015-1286-y
- Eyal G, Wiedenmann J, D’Angelo C, Ben-Zvi O, Kramarsky-Winter E, Treibitz T, Shaked Y, Smith TB, Harii S, Denis V, Noyes T, Tamir R, Loya Y (2015, Jun) Spectral diversity and regulation of fluorescence in a mesophotic reef habitat in the Red Sea. PLOS ONE 10(6), e0128697. doi:10.1371/journal.pone.0128697
- Denis V, Ribas-Deulofeu L, Loubeyres M, De Palmas S, Hwang SJ, Woo S, Song JI, Chen CA* (2015, Jan) Recruitment of the subtropical coral Alveopora japonica in the temperate waters of Jeju Island (33.24N, South Korea). BULLETIN OF MARINE SCIENCE 91(1):85-96. doi:10.5343/bms.2014.1032
- Hsu CM, De Palmas S, Kuo CY, Denis V, Chen CA* (2014, Sep) Identification of scleractinian coral recruits using fluorescent censusing and DNA barcoding techniques. PLOS ONE 9(9), e107366. doi: 10.1371/journal.pone.0107366
- Denis Vǂ, Loubeyres Mǂ, Doo SS, De Palmas S, Keshavmurthy S, Hsieh JH, Chen CA* (2014, Jun) Can benthic algae mediate the larval behavior and settlement of the coral Acropora muricata? CORAL REEFS 33(2), 431-440. doi:10.1007/s00338-014-1127-4
- Denis V, Ribas-Deulofeu L, De Palmas S, Chen CA* (2014, Jun) First record of the scleractinian coral Psammocora albopicta from Korean waters. MARINE BIODIVERSITY 44(2), 157-158. doi:10.1007/s12526-013-0195-y
- Woo Sǂ, Denis Vǂ, Yum S* (2014, Feb) Transcriptional changes caused by bisphenol A in Oryzias javanicus, a fish species highly adaptable to environmental salinity. MARINE DRUGS 12(2), 983-998. doi:10.3390/md12020983
- Woo S, Lee A, Denis V, Chen CA, Yum S* (2014, Jan) Transcript response of soft coral (Scleronephthya gracillimum) on exposure to polycyclic aromatic hydrocarbons. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH 21(2), 901-910. doi:10.1007/s11356-013-1958-5
- White KN, Ohara T, Fujii T, Kawamura I, Mizuyama M, Montenegro J, Shikiba H, Naruse T, McClelland T, Denis V, Reimer JD* (2013, Sep) Typhoon damage on a shallow mesophotic reef in Okinawa, Japan. PEERJ 1, e151. doi:10.7717/peerj.151
- Woo S, Denis V, Won H, Shin K, Lee G, Lee TK, Yum S* (2013, Sep) Expressions of oxidative stress-related genes and antioxidant enzymes activities in Mytilus galloprovincialis (Bivalvia, Mollusca) exposed to hypoxia. ZOOLOGICAL STUDIES 52, 15. doi:10.1186/1810-522X-52-15
- Denis V*, Guillaume MMM, Goutx M, De Palmas S, Debreuil J, Baker AC, Boonstra RK, Bruggemann JH (2013, Aug) Fast growth may impair regeneration capacity in the branching coral Acropora muricata. PLOS ONE 8(8), e72618. doi:10.1371/journal.pone.0072618
- Keshavmurthy S, Yang SY, Alamaru A, Chuang YY, Pichon M, Obura D, Fontana S, De Palmas S, Stefani F, Benzoni F, MacDonald A, Noreen AME, Chen C, Wallace CC, Moothien Pillay R, Denis V, Amri AY, Reimer JD, Mezaki T, Sheppard C, Loya Y, Abelson A, Mohammed MS, Baker AC, Mostafavi PG, Suharsono BA, Chen CA* (2013, Mar) DNA barcoding reveals the coral “laboratory-rat”, Stylophora pistillata encompasses multiple identities. SCIENTIFIC REPORTS 3, 1520. doi:10.1038/srep01520
- Denis V, Chen CA*, Song JI, Woo S (201, Feb) Alveopora japonica beds thriving under kelp. CORAL REEFS 32(2), 503. doi:10.1007/s00338-013-1019-z
- Denis V, Mezaki T, Tanaka K, Kuo CY, De Palmas S, Keshavmurthy S, Chen CA* (2013, Jan) Coverage, diversity, and functionality of a high-latitude coral community (Tatsukushi, Shikoku Island, Japan). PLOS ONE 8(1):e54330. doi:10.1371/journal.pone.0054330
- Denis V, Leung JKL, Hsu CM, Hsieh HJ, Tsai WS, Chen CA* (2012, Nov) Dark survival of Oulastrea crispata. GALAXEA: JOURNAL OF CORAL REEF STUDIES 14(1), 117-118. doi:10.3755/galaxea.14.117
- Fontana S, Keshavmurthy S, Hsieh HJ, Denis V, Kuo CY, Hsu CM, Leung JKL, Tsai WS, Wallace CC, Chen CA* (2012, Nov) Molecular evidence shows low species diversity of coral-associated hydroids in Acropora corals. PLOS ONE 7(11), e50130. doi:10.1371/journal.pone.0050130
- Hsu CM, Keshavmurthy S, Denis V, Kuo CY, Wang JT, Meng PJ, Chen CA* (2012, Oct) Temporal and spatial variations in symbiont communities of catch bowl coral Isopora palifera (Scleractinia; Acroporidae) on reefs in Kenting National Park, Taiwan. ZOOLOGICAL STUDIES 51(8), 1343-1353
- Keshavmurthy S, Hsu CM, Kuo CY, Denis V, Leung JKL., Fontana S, Hsieh HJ, Tsai WS, Su WC, Chen CA* (2012, Mar) Larval development of fertilized “pseudo-gynodioecious” eggs suggests a sexual pattern of gynodioecy in Galaxea fascicularis (Scleractinia: Euphyllidae). ZOOLOGICAL STUDIES 51(2), 143-149
- Chauvin AS*, Denis V, Cuet P (2011, Dec) Is the response of coral calcification to seawater acidification related to nutrient loading? CORAL REEFS 30(4), 911-923. doi:10.1007/s00338-011-0786-7
- Denis V*, Debreuil J, De Palmas S, Richard J, Guillaume MMM, Bruggemann JH (2011, May) Lesion regeneration capacities in populations of the massive coral Porites lutea at Réunion Island: Environmental correlates. MARINE ECOLOGY-PROGRESS SERIES 428, 105-117. doi:10.3354/meps09060
- Scaps P*, Denis V (2008, Nov) Can organisms associated with live scleractinian corals be used as indicators of coral reef status? ATOLL RESEARCH BULLETIN 566, 1-18
- Scaps P*, Denis V, Berhimpon S (2008, Jan) Comparaison des associations entre le bivalve pectinidé Pedum spondyloideum (Bivalvia, Pteriomorphia, Pectinidae) et les scléractiniaires hérmatypiques reconnues en Mer Rouge et dans l’ouest de l’Océan Pacifique. BULLETIN DE LA SOCIETE ZOOLOGIQUE DE FRANCE (1-3), 39-50
- Scaps P*, Denis V, Berhimpon S, Runtukahu F (2007, Dec) Zooxanthellate scleractinian corals of the northern coast of Sulawesi. ATOLL RESEARCH BULLETIN 553, 1-21
- Scaps P*, Denis V (2007, Aug) Association between the scallop Pedum spondyloideum (Bivalvia, Pteriomorphia, Pectinidae) and scleractinian corals from the Wakatobi Marine National Park (SE Sulawesi, Indonesia). RAFFLES BULLETIN OF ZOOLOGY 55(2), 371-380
- Scaps P*, Denis V, Berhimpon S, Runtukahu F (2007, Jan) Forte biodiversité en coraux-champignons (Scléractiniaires: Fungiidés) dans la région de Pulisan (nord-est de l’île de Sulawesi, Indonésie). BULLETIN DE LA SOCIETE ZOOLOGIQUE DE FRANCE 132(1-2), 87-110
- Scaps P*, Denis V, Berhimpon S, Kaligis F (2005, Jan) Coral associations and space competitors of Pedum spondyloideum (Gmelin, 1791) (Bivalvia, Pteriomorpha, Pectinidae) from the northeast coast of Sulawesi, Indonesia. BASTERIA 69(4-6), 157-166
B. Book chapters
- Denis V*, Soto D, De Palmas S, Lin YTV, Benayahu Y, Huang YM, Liu SL, Chen JW, Chen Q, Sturaro N, Ho MJ, SU Y, Dai CF, Chen CA (2019, Jun) Taiwan. In: Loya Y, Puglise KA, Bridge T (eds) Mesophotic coral ecosystems of the world. SPRINGER, CHAM. pp 249-264. doi:10.1007/978-3-319-92735-0_14
- Denis V* (2014, Jan) Migration of corals in Taiwan. In Kimura T, Tun K, Chou LM (Eds) Status of coral reefs in East Asian seas region: 2014. MINISTRY OF THE ENVIRONMENT, JAPAN. pp 23-30
C. Conference proceedings
- Scaps P*, Denis V, Haapkyla J (2008) Organisms associated with live scleractinian corals as indicators of coral reef status in the Wakatobi Marine National Park (SE Sulawesi, Indonesia). PROCEEDINGS 11th INTERNATIONAL CORAL REEF SYMPOSIUM 810-814
D. Technical reports
- Bruggemann JH*, Guillaume MMM, Bigot L, Chabanet P, Denis V, Durville P, Mulochau T, Naim O, Teissier E (2008). Mise en œuvre de l’effet réserve: développement des protocoles et établissement de l’état initial de la réserve naturelle nationale marine de la réunion (secteurs de la saline – souris blanche et de saint-leu). RAPPOR UR/MNHN/AR/APMR