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陳韋仁

教授

海洋生物與漁業組

  • 專長領域

    演化生物學、分子親緣關係學、魚類學、生物多樣性、族群遺傳學、海洋基因體學

  • 學經歷

    • 2017/08-迄今 國立臺灣大學海洋研究所 教授
    • 2013/08-2017/07 國立臺灣大學海洋研究所 副教授
    • 2009/08-2013/07 國立臺灣大學海洋研究所 助理教授
    • 2006-2009 美國聖路易斯大學 博士後研究員
    • 2003-2005 法國國家農學研究院波爾多中心 博士後研究員
    • 2002-2003 德國康斯坦斯大學 博士後研究員
    • 2001-2002 美國內布拉斯加大學 博士後研究員
    • 2001 法國巴黎第六大學生命科學(演化生物學) 博士
    • 1997 法學巴黎第六大學生物多樣性／演化生物學 DEA學位
    • 1993 國立台灣大學動物系漁生組 學士

  • 榮譽

    • 2012 國立臺灣大學教學優良獎

教學

海洋系統分類保育專題研究、演化族群遺傳學原理與實作、海洋魚類分類研究及實作、脊椎動物學、分子親緣關係學

著作

A. Journal Papers

  • WONG, M.-K., & CHEN, W.-J. (2024) Exploring the phylogeny and depth evolution of cusk eels and their relatives (Ophidiiformes: Ophidioidei). Molecular Phylogenetics and Evolution 199, 108164 (link).
  • CHEN, H.-P., LEE, M.-Y., & CHEN, W.-J. (2024) Integrative taxonomy reveals unanticipated hidden diversity in the monotypic goosefish genus Lophiomus (Teleostei, Lophiidae), with description of three new species and resurrection of Chirolophius laticeps Ogilby 1910. European Journal of Taxonomy 943(1), 239–287 (link).
  • CHEN, W.-J., MIkI, R., NEVILL, J., &  BORSA, P. (2024) Gymnocranius indicus, a new large-eye seabream from the Indian Ocean.Journal of the Marine Biological Association of the United Kingdom 104, e38, 1-10 (link).
  • Lee, H., Lee, K. S., Hsu, C. H., Lee, C. W., Li, C. E., Wang, J. K., Tseng, C. C., Chen, W. -J., Horng, C. C., Ford, C. T., Kroh, A., Bronstein, O., Tanaka, H., Oji, T., Lin, J. P., Janies, D. (2024) Embracing the taxonomic and topological stability of phylogenomics Reply. Scientific Reports, 14(1), 4094.
  • Chanet, B., Schnell, N. K., Guintard, C., Chen, W. -J.* (2023) Anatomy of the endocrine pancreas in actinopterygian fishes and its phylogenetic implications. Scientific Reports, 13(1), 22501.
  • Kong, M. S., Hung, C. H., Hsu, L. L., Yuan, H. W., Chen, W. -J.* (2023) Exploring genetic diversity and population structure of the Little Tern (Sternula albifrons) in Taiwan based on mtDNA and ddRAD sequencing data. Conservation Genetics, 25(2), 375-392.
  • Lee, H., Lee, K. S., Hsu, C. H., Lee, C. W., Li, C. E., Wang, J. K., Tseng, C. C., Chen, W. -J., Horng, C. C., Ford, CT., Kroh, A., Bronstein, O., Tanaka, H., Oji, T., Lin, J. P., Janies, D. (2023) Phylogeny, ancestral ranges and reclassification of sand dollars. Scientific Reports, 13(1).
  • Parey, E., Louis, A., Montfort, J., Bouchez, O., Roques, C., Iampietro, C., Lluch, J., Castinel, A., Donnadieu, C., Desvignes, T., Bucao, C. F., Jouanno, E., Wen, M., Mejri, S., Dirks, R., Jansen, H., Henkel, C., Chen, W. -J., Zahm, M., Cabau, C., Klopp, C., Thompson, A., Robinson-Rechavi, M., Braasch, I., Lecointre, G., Bobe, J., Postlethwait, J. H., Berthelot, C., Crollius, H. R., Guiguen, Y.(2023) Genome structures resolve the early diversification of teleost fishes. Science, 379(6632), 572-575.
  • Hsu, T. H. T, Chen, W. -J., Denis, V. (2023) Navigating the scales of diversity in subtropical and coastal fish assemblages ascertained by eDNA and visual surveys. Ecological Indicators, 148, 110044.
  • Chang, F. H., Lin, Y. C., Chiang, K. P., Nien, Y. H., Hsieh, C. H., Chen, W. -J., Hung, C. C., Kobari, T., Saito, H., Savidge, W. (2023) Editorial: Oceanographic processes linking nearshore, continental shelf, and shelf break. Frontiers in Marine Science, 10, 1137312.
  • Tashiro, F., Chen, W. -J. (2022) Ilyophis singularis (Synaphobranchidae; Ilyophinae), a new deep-sea eel from the South China Sea. Ichthyological Research, 70(3),332-336.
  • Lin, Y. V., Hsiao, W. V., Chen, W. -J., Denis, V. (2022) Habitat change and its consequences on reef fish specialization in biogeographic transition zones. Journal of Biogeography, 49(8), 1549-1561.
  • Lee, H., Puillandre, N., Kano, Y., Chen, W.-J., Samadi, S. (2022) Biodiversity and phylogeny of Cocculinidae (Gastropoda: Cocculinida) in the Indo-West Pacific. Zoological Journal Of The Linnean Society, 196(1), 366-392.
  • Lim, H. C., Habib, A., Chen, W.-J.* (2021) Comparative Phylogeography and Phylogeny of Pennah Croakers (Teleostei: Sciaenidae) in Southeast Asian Waters. Genes, 12(12), 1926.
  • Wong, M. K., Lee, M. Y, Chen, W.-J.* (2021) Integrative taxonomy reveals a rare and new tusk-eel species of Luciobrotula (Teleostei, Ophidiidae) from the Solomon Sea, West Pacific. European Journal of Taxonomy, 750, 52-69.
  • Okamoto, M., Chen, W.-J., Motomura, H. (2020) New distributional records of three deepwater cardinalfishes Epigonus angustifrons, E. denticulatus, and E. exodon (Perciformes: Epigonidae) in the South Indian Ocean. Cybium, 44(2), 165-168.
  • Chen, W.-J.*, Borsa, P. (2020) Diversity, phylogeny, and historical biogeography of large-eye seabreams (Teleostei: Lethrinidae). Molecular Phylogenetics and Evolution, 151, 106902.
  • Hurzaid, A., Chan, T. Y., Nor, S. A. M., Muchlisin, Z. A., Chen, W.-J.* (2020) Molecular phylogeny and diversity of penaeid shrimps (Crustacea: Decapoda) from South-East Asian waters. Zoologica Scripta, 49(5), 596-613.
  • Campbell, M. A., Tongboonkua, P., Chanet, B., Chen, W.-J. (2020) The distribution of the recessus orbitalis across flatfishes (order: Pleuronectiformes). Journal of Fish Biology, 97(1), 293-297.
  • Ogino, A., Lee, S.-H., Chen, W.-J., Matsunuma, M. (2020) Chelidoperca cerasina sp. nov., a new perchlet (Perciformes: Serranidae) from the southwest Pacific Ocean. Ichthyological Research, 67(1), 117-132.
  • Delrieu-Trottin, E., Durand, J. D., Limmon, G., Sukmono, T., Kadarusman, Sugeha, H. Y., Chen, W.-J., Busson, F., Borsa, P., Dahruddin, H., Sauri, S., Fitriana, Y., Zein, M. S. A., Hocd, R., Pouyaud, L., Keith, P., Wowor, D., Steinke, D., Hanner, R., Hubert, N. (2020) Biodiversity inventory of the grey mullets (Actinopterygii: Mugilidae) of the Indo-Australian Archipelago through the iterative use of DNA-based species delimitation and specimen assignment methods. Evolutionary Applications, 13(6), SI, 1451-1467.
  • Chen, C.-J., Chen, W.-J., Shikina, S., Denis, V., Chang, C.-F. (2020) The plasticity of gonad development of sexual reproduction in a scleractinian coral, Porites lichen. General and Comparative Endocrinology, 285, 113270.
  • Lee, H., Lin, J. P., Li, H. C., Chang, L. Y., Lee, K. S., Lee, S. J, Chen, W.-J., Sankar, A., & Kang, S. C. (2019) Young colonization history of a widespread sand dollar (Echinodermata, Clypeasteroida) in western Taiwan. Quaternary International, 528, 120-129.
  • Ogino, A., Lee, S.H, Chen, W.-J, & Matsunuma, M. (2019) Chelidoperca cerasina sp. nov., a new perchlet (Perciformes: Serranidae) from the southwest Pacific Ocean. Ichthyological Research, DOI: 10.1007/s10228-019-00714-9.
  • Campbell, M.A., Chanet, B., Chen, J.N., Lee, M.Y., & Chen, W.-J.* (2019) Origins and relationships of the Pleuronectoidei: Molecular and morphological analysis of living and fossil taxa. Zoologica Scripta, 48(5), 640-656.
  • Lee, S.H., Lee, M.Y., Matsunuma, M., & Chen, W.-J.* (2019) Exploring the Phylogeny and Species Diversity of Chelidoperca (Teleostei: Serranidae) From the Western Pacific Ocean by an Integrated Approach in Systematics, With Descriptions of Three New Species and a Redescription of C. lecromi Fourmanoir, 1982. Frontiers in Marine Science, 6, UNSP 465.
  • Lee, H., Chen, W.-J.*, Puillandre, N., Aznar-Cormano, L., Tsai, M.H., & Samadi, S. (2019) Incorporation of deep-sea and small-sized species provides new insights into gastropods phylogeny. Molecular Phylogenetics and Evolution, 135, 136-147.
  • Fricke, R., Allen, G.R., Amon, D., Andrefouet, S., Chen, W.-J., Kinch, J., Mana, R., Russell, B.C., Tully, D., & White, W.T. (2019) Checklist of the marine and estuarine fishes of New Ireland Province, Papua New Guinea, western Pacific Ocean, with 810 new records. ZOOTAXA, 4588(1), 1-+.
  • Chen, J.-N., Samadi, S., & Chen, W.-J.* (2018) Rhodopsin gene evolution in early teleost fishes. PLoS ONE, 13(11), e0206918.
  • Bakar, A.A., Adamson, E.A.S., Juliana, L.H., Nor Mohd S.A., Chen, W.-J., Man, A., et al. (2018) DNA barcoding of Malaysian commercial snapper reveals an unrecognized species of the yellow-lined Lutjanus (Pisces:Lutjanidae). PLoS ONE, 13(9), e0202945.
  • Okamoto, M., Chen, W.-J., & Shinohara, G. (2018) Epigonus okamotoi (Perciformes: Epigonidae), a junior synonym of E. draco, with new distributional records for E. atherinoides and E. lifouensis in the West Pacific. Zootaxa, 4476 (1), 141–150.
  • Wang, S.-Y., Chen, J.-N., Russell, B.C., & Chen, W.-J.* (2018) First record of Gauguin’s blunt-nose lizardfish, Trachinocephalus gauguini Polanco, Acero & Betancur 2016 (Teleostei: Synodontidae) outside the Marquesas Archipelago. Zootaxa, 4476 (1), 151–156.
  • Tongboonkua, T., Lee, M.-Y., & Chen, W.-J.*, (2018) A new species of sinistral flatfish of the genus Chascanopsetta (Teleostei: Bothidae) from off Papua New Guinea, western Pacific Ocean. Zootaxa, 4476 (1), 168–181.
  • Lavoué, S., Ratmuangkhwang, S., Ho, H.-C., Chen, W.-J., Siti Azizah, M.N. (2018) Swimbladder evolution of longfin herrings (Pristigasteridae, Teleostei). Zoological Studies 57, 39.
  • Chen, W.-J., Miki, R., and Borsa, P. (2017) Gymnocranius obesus, a new large-eye seabream from the Coral Triangle. Comptes Rendus Biologies, 340 (11-12), 520-530.
  • Hung, K. W., Russell, B. C., and Chen, W.-J.* (2017) Molecular systematics of threadfin breams and relatives (Teleostei, Nemipteridae). Zoologica Scripta, 46 (5), 536-551.
  • Lavoue, S.,Bertrand, J. A. M., Wang, H. Y., Chen, W.-J., Ho, H. C., Motomura, H., Hata, H., Sado, T., and Miya, M. (2017) Molecular systematics of the anchovy genus Encrasicholina in the Northwest Pacific. PLoS One, 12 (7), 0181329.
  • Lavoue, S.,Bertrand, J. A. M., Chen, W.-J., Ho, H. C., Motomura, H., Sado, T., and Miya, M. (2017) Phylogenetic position of the rainbow sardine Dussumieria (Dussumieriidae) and its bearing on the early evolution of the Clupeoidei. Gene, 623, 41-47.
  • Lo, P. C., Liu, S. H., Nor, S. A. M., and Chen, W.-J.* (2017) Molecular exploration of hidden diversity in the Indo-West Pacific sciaenid clade. PLoS ONE, 12 (4), e0176623.
  • Bertrand, J. A. M., Borsa, P., and Chen, W.-J.* (2017) Phylogeography of the sergeants Abudefduf sexfasciatus and A-vaigiensis reveals complex introgression patterns between two widespread and sympatric Indo-West Pacific reef fishes. Molecular Ecology, 26 (9), 2527-2542.
  • Fricke, R., Chen, J. N., and Chen, W.-J. (2017) New case of lateral asymmetry in fishes: A new subfamily, genus and species of deep water clingfishes from Papua New Guinea, western Pacific Ocean. Comptes Rendus Biologies, 340 (1), 47-62.
  • Lee, H., Samadi, S., Puillandre, N., Tsai, M. H., Dai, C. F., and Chen, W.-J. (2016) Eight new mitogenomes for exploring the phylogeny and classification of Vetigastropoda. Journal of Molluscan Studies, 82, 534-541.
  • Borsa, P., Durand, J. D., Chen, W.-J., Hubert, N., Muths, D., Mou-Tham, G., and Kulbicki, M. (2016) Comparative phylogeography of the western Indian Ocean reef fauna. Acta Oecologica-International Journal of Ecology, 72, 72-86.
  • Chen, C.-J., Shikina, S., Chen, W.-J., Chung, Y.-J., Chiu, Y.-L., Bertrand, J.A.M., Lee, Y.-H., and Chang, C.-F. (2016) A novel female-specific and sexual reproduction-associated Dmrt gene discovered in the stony coral, Euphyllia ancora. Biology of Reproduction, 94 (2), Article Number 40.
  • Chen, W.-J.*, Ho, H. C., and Borsa, P. (2016) Taiwanese Records of Oblong Large-Eye Seabream Gymnocranius oblongus (Teleostei: Lethrinidae) and Other Rare or Undetermined Large-Eye Seabreams. Frontiers in Marine Science, 3, 107.
  • Samadi, S., Puillandre, N., Pante, E., Boisselier, M. C., Corbari, L., Chen, W.-J., Maestrati, P., Mana, R., Thubaut, J., Zuccon, D. and Hourdez, S. (2015) Patchiness of deep-sea communities in Papua New Guinea and potential susceptibility to anthropogenic disturbances illustrated by seep organisms, Marine Ecology-An Evolutionary Perspective, 36, 109-132.
  • Lo, P. C., Liu, S. H., Chao, N. L., Nunoo, F. K. E., Mok, H. K., Chen, and W. J.* (2015) A multi-gene dataset reveals a tropical New World origin and Early Miocene diversification of croakers (Perciformes: Sciaenidae). Molecular Phylogenetics and Evolution, 88, 132-143.
  • Borsa, P., Sembiring, A., Fauvelot, C., and Chen, W. J. (2014) Resurrection of Indian Ocean humbug damselfish, Dascyllus abudafur (Forsskal) from synonymy with its Pacific Ocean sibling, Dascyllus aruanus (L.). Comptes Rendus Biologies, 337(12), 709-716.
  • Liu, S.-Y.V., Chang, F.-T., Borsa, P., Chen, W.-J., and Dai, C.-F.* (2014) Phylogeography of the humbug damselfish, Dascyllus aruanus (Linnaeus, 1758): evidence of Indo-Pacific vicariance and genetic differentiation of peripheral populations. Biological Journal of the Linnean Society, 113, 931–942.
  • Chang, C.-H., Li. F. Shao, K.-T., Lin, Y.-S., Morosawa, T. Kim, S., Koo, H. Kim, W., Lee, J.-S., He, S., Smith, C., Reichard, M., Miya, M., Sado, T., Uehara, K., Lavoué, S., Chen, W.-J.*and Mayden, R.L. (2014) Phylogenetic relationships of Acheilognathidae (Cypriniformes: Cyprinoidea) as revealed from evidence of both nuclear and mitochondrial gene sequence variation: Evidence for necessary taxonomic revision in the family and the identification of cryptic species. Molecular Phylogenetics and Evolution, 81, 182-194.
  • Chen, W.-J.*, Santini, F., Carnevale, G., Chen, J.-N., Liu, S.-H., Lavoue, S. and Mayden, R.L. (2014) New insights on early evolution of spiny-rayed fishes (Teleostei: Acanthomorpha). Frontiers in Marine Science 1, 53 (Open Access).
  • Campbell, M. A., Lopez, J. A., Satoh, T. P. , Chen, W. -J*., and Miya, M. (2014) Mitochondrial genomic investigation of flatfish monophyly, Gene, 551(2), 176-182.
  • Chen, W. -J.*, Lavoue, S., Beheregaray, L. B., and Mayden, R. (2014) Historical biogeography of a new antitropical clade of temperate freshwater fishes, Journal of Biogeography, 41(9), 1806-1818.
  • Fricke, R., Allen, G. R., Andrefouet, S., Chen, W. -J., Hamel, M. A. , Laboute, P., Mana, R. , Hui, T. H. , and Uyeno, D. (2014) Checklist of the marine and estuarine fishes of Madang District, Papua New Guinea, western Pacific Ocean, with 820 new records, Zootaxa, 3832(1), 1-247.
  • 1Campbell, M. A., Chen, W. -J.*, Lopez, J. A. (2014) Molecular data do not provide unambiguous support for the monophyly of flatfishes (Pleuronectiformes): A reply to Betancur-R and Orti, Molecular Phylogenetics and Evolution, 75, 149-153.
  • Chen, J. N., Lopez, J. A., Layoue, S., Miya, M., and Chen, W. -J.* (2014) Phylogeny of the Elopomorpha (Teleostei): Evidence from six nuclear and mitochondrial markers, Molecular Phylogenetics and Evolution, 70, 152-161.
  • Borsa, P., Hsiao, D. R., Carpenter, K. E., and Chen, W. -J. (2013) Cranial morphometrics and mitochondrial DNA sequences distinguish cryptic species of the longface emperor (Lethrinus olivaceus), an emblematic fish of Indo-West Pacific coral reefs, Comptes Rendus Biologies, 336(10), 505-514.
  • Campbell, M.A., Chen, W.-J., and Lopez, J.A. (2013) Are flatfishes (Pleuronectiformes) monophyletic? Molecular Phylogenetics and Evolution, 69 (3), 664-673.
  • Chen, W.-J., Lavoue, S., and Mayden, R.L. (2013) Evolutionary origin and early biogeography of otophysan fishes (Ostariophysi: Teleostei). Evolution, 67, 2218-2239.
  • Borsa, P., Arlyza, I.S., Chen, W.-J., Durand, J.D., Meekan, M.G., and Shen, K.N. (2013) Resurrection of New Caledonian maskray Neotrygon trigonoides (Myliobatoidei: Dasyatidae) from synonymy with N. kuhlii, based on cytochrome-oxidase I gene sequences and spotting patterns, Comptes Rendus Biologies, 336(4), 221-232.
  • Borsa, P., Bearez, P., Paijo, S., and Chen, W. -J. (2013) Gymnocranius superciliosus and Gymnocranius satoi, two new large-eye breams (Sparoidea: Lethrinidae) from the Coral Sea and adjacent regions, Comptes Rendus Biologies, 336(4), 233-240.
  • Ho, H.C. and Chen, W.-J. (2013) DNA sequences and morphological variation in Lophiodes iwamotoi Ho, Seret and Shao, 2011 based on new material from New Caledonia, ZOOTAXA, 3682(4), 594-598.
  • Lavoue, S., Miya, M., Musikasinthorn, P., Chen, W. -J., and Nishida, M. (2013) Mitogenomic Evidence for an Indo-West Pacific Origin of the Clupeoidei (Teleostei: Clupeiformes), PLoS One, 8(2), e56485.
  • Chen, W. -J. and Mayden, R. L. (2012) Phylogeny of suckers (Teleostei: Cypriniformes: Catostomidae): further evidence of relationships provided by the single-copy nuclear gene IRBP2, Zootaxa, 3586 (SI), 195-210.
  • Durand, J. D., Chen, W. -J., Shen, K. N., Fu, C. Z., and Borsa, P. (2012) Genus-level taxonomic changes implied by the mitochondrial phylogeny of grey mullets (Teleostei: Mugilidae), Comptes Rendus Biologies, 335 (10-11), 687-697.
  • Yang L., Arunachalam M., Sado T., Levin B.A., Golubtsov A.S., Freyhof J., Friel J.P., Chen W.-J., Hirt, M.V., Manickam R., Agnew M.K., Simons A.M., Saitoh K., Miya M., Mayden R.L., and He S.P. (2012) Molecular phylogeny of the cyprinid tribe Labeonini (Teleostei: Cypriniformes). Molecular Phylogenetics and Evolution, 65(2): 362-379.
  • Durand, J. D., Shen, K. N., Chen, W.-J., Jamandre, B. W., Blel, H., Diop, K., Nirchio, M., Garcia de Leon, F. J., Whitfield, A. K., Chang, C. W. and Borsa, P. (2012) Systematics of the grey mullets (Teleostei: Mugiliformes: Mugilidae): Molecular phylogenetic evidence challenges two centuries of morphology-based taxonomy, Molecular Phylogenetics and Evolution, 64(1), 73-92.
  • Tang, K. L., Agnew, M. K., Chen, W.-J., Hirt, M. V., Raley, M. E., Sado, T., Schneider, L. M., Yang, L., Bart, H. L., He, S. P., Liu, H. Z., Miya, M., Saitoh, K., Simons, A. M., Wood, R. M. and Mayden, R. L. (2011) Phylogeny of the gudgeons (Teleostei: Cyprinidae: Gobioninae), Molecular Phylogenetics and Evolution, 61(1), 103-124.
  • Corio-Costet, M.-F., Dufour, M. C., Cigna, J., Abadie, P. and Chen, W.-J. (2011) Diversity and fitness of Plasmopara viticola isolates resistant to QoI fungicides. European Journal of Plant Pathology, 129, 315-329.
  • Saitoh, K., Chen, W.-J. and Mayden, R. L. (2010) Extensive hybridization and tetrapolyploidy in spined loach fish. Molecular Phylogenetics and Evolution, 56, 1001-1010.
  • Mayden, R. L. and Chen, W.-J. (2010) The world’s smallest vertebrate species of the Genus Paedocypris: A new family of freshwater fishes and the sister group to the world’s most diverse clade of freshwater fishes (Teleostei: Cypriniformes). Molecular Phylogenetics and Evolution, 57, 152-175.
  • Chen, W.-J. and Mayden, R. L. (2010) A phylogenomic perspective on the new era of ichthyology. BioScience, 60, 421-432.
  • Borsa, P., Collet, A., Carassou, L., Ponton, D. and Chen, W.-J. (2010) Multiple nuclear and mitochondrial genotyping identifies emperors and large-eye breams (Teleostei: Lethrinidae) from New Caledonia and reveals new large-eye bream species. Biochemical Systematics and Ecology, 38, 370-389.
  • Borsa, P., Béarez, P. and Chen, W.-J. (2010) Gymnocranius oblongus, a new large-eye bream species from New Caledonia (Teleostei: Lethrinidae). Comptes Rendus Biologies, 333, 241-247.
  • Mayden, R. L., Chen, W.-J., Bart, H. L., Doosey, M. H., Simons, A. M., Tang, K. L., Wood, R. M., Agnew, M. K., Yang, L., Hirt, M. V., Clements, M. D., Saitoh, K., Sado, T., Miya, M. and Nishida, M. (2009) Reconstructing the phylogenetic relationships of the Earth’s most diverse clade of freshwater fishes – Order Cypriniformes (Actinopterygii: Ostariophysi): a case study using multiple nuclear loci and the mitochondrial genome. Molecular Phylogenetics and Evolution, 51, 500-514.
  • Chen, W.-J. and Mayden, R. L. (2009) Molecular systematics of the Cyprinoidea (Teleostei: Cypriniformes), the world’s largest clade of freshwater fishes: Further evidence from six nuclear genes. Molecular Phylogenetics and Evolution, 52, 544-549.
  • Chen, W.-J., Lheknim, V. and Mayden, R. L. (2009) Molecular phylogeny of the Cobitoidea (Teleostei: Cypriniformes) revisited: position of enigmatic loach Ellopostoma Vaillant resolved with six nuclear genes. Journal of Fish Biology, 75, 2197-2208.
  • Saitoh, K. and Chen, W.-J. (2008) Reducing cloning artifacts for recovery of allelic sequences by T7 endonuclease I cleavage and single re-extension of PCR products – a benchmark. Gene, 423, 92-95.
  • Mayden, R. L., Tang, K. L., Wood, R. M., Chen, W.-J., Agnew, M. K., Conway, K. W., Yang, L., Simons, A. M., Bart, H. L., Harris, P. M., Li, J., Wang, X., Saitoh, K., He, S., Liu, H., Chen, Y., Nishida, M. and Miya, M. (2008) Inferring the Tree of Life of the order Cypriniformes, the earth’s most diverse clade of freshwater fishes: implications of varied taxon and character sampling. Journal of Systematics and Evolution, 46, 424-438.
  • He, S., Mayden, R. L., Wang, X., Wang, W., Tang, K. L., Chen, W.-J. and Chen, Y. (2008). Molecular phylogenetics of the family Cyprinidae (Actinopterygii: Cypriniformes) as evidenced by sequence variation in the first intron of S7 ribosomal protein-coding gene: further evidence from a nuclear gene of the systematic chaos in the family. Molecular Phylogenetics and Evolution, 46, 818-829.
  • He, S., Gu, X., Mayden, R. L., Chen, W.-J., Conway, K. W. and Chen, Y. (2008b). Phylogenetic position of the enigmatic genus Psilorhynchus (Ostariophysi: Cypriniformes): evidence from the mitochondrial genome. Molecular Phylogenetics and Evolution, 47, 419-425.
  • Conway, K. W., Chen, W.-J. and Mayden, R. L. (2008) The “Celestial Pearl danio” is a miniature Danio (s.s) (Ostariophysi: Cyprinidae): evidence from morphology and molecules. Zootaxa, 1686, 1-28.
  • Chen, W.-J., Miya, M., Saitoh, K. and Mayden, R. L. (2008) Phylogenetic utility of two existing and four novel nuclear gene loci in reconstructing Tree of Life of ray-finned fishes: the order Cypriniformes (Ostariophysi) as a case study. Gene, 423, 125-134.
  • Chen, W.-J., Ruiz-Carus, R. and Ortí, G. (2007) Relationships among four genera of mojarras (Teleostei: Perciformes: Gerreidae) from the western Atlantic and their tentative placement among percomorph fishes. Journal of Fish Biology, 70 (sb), 202-218.
  • Chen, W.-J., Delmotte, F., Richard-Cervera, S., Douence, L., Greif, C. and Corio-Costet, M. F. (2007) At least two origins of fungicide resistance in grapevine downy mildew populations. Applied and Environmental Microbiology, 73, 5162-5172.
  • Delmotte, F., Chen, W.-J., Richard-Cervera, S., Greif, C., Papura, D., Giresse, X., Mondor-Genson, G. and Corio-Costet, M. F. (2006) Microsatellite DNA markers for Plasmopara viticola, the causal agent of downy mildew of grapes. Molecular Ecology Notes, 6, 379-381.
  • Luo, J., Yang, D., Suzuki, H., Wang, Y., Chen, W.-J., Campbell, K. L. and Zhang, Y. P. (2004) Molecular phylogeny and biogeography of Oriental voles: genus Eothenomys (Muridae, Mammalia). Mol Phylogenet Evol, 33, 349-362.
  • López, J. A., Chen, W.-J. and Ortí, G. (2004) Esociform phylogeny. Copeia, 2004, 449-464.
  • Chen, W.-J., Ortí, G. and Meyer, A. (2004) Novel evolutionary relationship among four fish model systems. Trends in Genetics, 20, 424-431.
  • Chen, W.-J., Bonillo, C. and Lecointre, G. (2003) Repeatability of clades as criterion of reliability: a case study for molecular phylogeny of Acanthomorpha (Teleostei) with larger number of taxa. Molecular Phylogenetics and Evolution 26, 262-288.
  • Derome, N., Chen, W.-J., Dettai, A., Bonillo, C. and Lecointre, G. (2002) Phylogeny of Antarctic dragonfishes (Bathydraconidae, Notothenioidei, Teleostei) and related families based on their anatomy and two mitochondrial genes. Molecular Phylogenetics and Evolution 24, 139-152.

B. Book Chapters

  • Chen, J.-N.,Samadi, S., and Chen, W.-J.* (2015) Elopomorpha (teleostei) as a new model fish group for evolutionary biology and comparative genomics. In: P. Pontarotti, ed., Evolutionary Biology: Biodiversification from Genotype to Phenotype, pp.329. Springer.
  • Lavoué S.*, Konstantinidis P., and Chen W.-J. (2014) Progress in Clupeiform Systematics. In: K. Ganias, ed., Biology and Ecology of Anchovies and Sardines. Science Publishers, Enfield, New Hampshire, pp. 1-42.
  • Corio-Costet, M.-F., Martinez, F., Delmotte, F., Douence, L., Richart-Cervera, S. and Chen, W.-J. (2008) Resistance of Plasmopara viticola to QoIs fungicides: Origin and Diversity. In Modern fungicides and antifungal compounds V. (Dehne, H. W., Deising, H. B., Gisi, U., Kuck, K. H., Russell, P. E. and Lyr, H., eds.), pp. 107-112. Braunschweig, Germany: DPG.
  • Chen, W.-J., Bonillo, C. and Lecointre, G. (1998) Phylogeny of the Channichthyidae (Notothenioidei, Teleostei) based on two mitochondrial genes. In Fishes of Antarctica: A biological overview. (di Prisco, G., Pisano, E. and Clarke, A., eds.), pp. 187-198. Milano, Italy: Springer-Verlag.