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謝志豪

特聘教授

歷屆所長 海洋生物與漁業組

  • 專長領域

    理論生態學、統計生態學、生物海洋學、系統生態學、漁業海洋學、浮游動物生物學

  • 學經歷

    • 2014-迄今 國立臺灣大學海洋研究所 教授
    • 2011-2014 國立臺灣大學海洋研究所 副教授
    • 2007-2010 國立臺灣大學海洋研究所 助理教授
    • 2006-2007 國立臺灣海洋大學海洋環境與生態研究所 助理科學家
    • 2006-2007 日本京都大學生態研究中心 博士後研究學者
    • 2001-2006 美國加州大學聖地牙哥分校斯克里普斯海洋研究所 博士
    • 1999-2001 國立臺灣大學動物研究所 碩士
    • 1993-1997 國立臺灣大學動物學系 學士

  • 榮譽

    • 2019, 2022 國立臺灣大學特聘教授
    • 2015, 2019 國科會傑出研究獎
    • 2009, 2017 國立臺灣大學教學優良獎
    • 2010, 2016, 2017 國立臺灣大學績優教研人員
    • 2013, 2014, 2015 國立臺灣大學本院績優教研人員
    • 2015 社團法人日本生態學會琵琶湖賞
    • 2014 國際青年商會中華民國總會十大傑出青年
    • 2010 國科會吳大猷先生紀念獎

教學

海洋生態永續專題、生物海洋學、統計生態學與程式語言應用、海洋資源學、海洋監測與技術、臺灣區域海洋學、生物統計學、環境生態與生物多樣性、地球系統科學通論、生命科學導論、探索臺灣:自然環境與資源、生命科學數學

著作

  • Chang, F. H., G. C. Gong, C. H. Hsieh, P. W. Y. Chen, V. Mukhanov., and A. Y. Tsai (2024) Vertical variations of bacterial growth, mortality loss to nanoflagellates, and viruses in the subtropical northwestern Pacific Ocean. Journal of Marine System. 243: 103963.
  • Huang, Y. J., C. W. Chang, and C. -H. Hsieh (2024) Detecting shifts in nonlinear dynamics using Empirical Dynamic Modeling with Nested-Library Analysis. Plos Computational Biology, 20(1): e1011759.
  • Tao, H. H., C. W. Chang, C. W., and C. -H. Hsieh (2024) Exploring mechanisms of spatial segregation between body size groups within fish populations under environmental change. Ecography, 2024(3).
  • dela Paz, E. S. P., F. S. Lin, C. W. Chang, C. -H. Hsieh, P. F. Lee, F. K. Shiah, and C. Y. Ko (2023) Tropical cyclone effects enhance limnetic plankton trophic-level relationships in a subtropical oligotrophic freshwater ecosystem. Freshwater Biology, 69(2): 180-192.
  • dela Paz, E. S. P., C. C. Lai, F. K. Shiah, C. -H. Hsieh, and C. Y. Ko (2023) Effects of Tropical Cyclone Passage on Plankton Community Respiration in a Phosphate-Limited Freshwater Ecosystem. Zoological Studies, 62: 58.
  • Chen, Y. A., F. H. Chang, H. H. Tao, and C. -H. Hsieh (2023) Seasonal variation of euphausiid life stage and taxonomic composition near the upwelling site northeast of Taiwan. Continental Shelf Research, 269: 105135
  • Hung, W. C., J. Hsu, Y. J. Chang, W. B. Huang, C. -H. Hsieh, and M. T. Chung (2023) Spatiotemporal variations and influential factors affecting reproductive dynamics of Pacific saury in the Northwest Pacific during fishing season. Journal of Fish Biology, 103(6): 1335-1346.
  • Yang, J. W., F. H. Chang, Y. C. Yeh, A. Y. Tsai, K. P. Chiang, F. K. Shiah, G. C. Gong, and C. -H. Hsieh (2023) Trade-Offs between Competitive Ability and Resistance to Top-Down Control in Marine Microbes. Msystems, 8(2).
  • Grziwotz, F., C. W. Chang, V. Dakos, E. H. van Nes, M. Schwarzlander, O. Kamps, M. Hessler, I. T. Tokuda, A. Telschow, and C. -H. Hsieh (2023) Anticipating the occurrence and type of critical transitions. Science Advances, 9(1): eaba4558.
  • Chang, F. H., Y. C. Lin, K. P. Chiang, Y. H.Nien, C. -H. Hsieh, W. J. Chen, C. C. Hung, T. Kobari, H. Saito, and W. Savidge (2023) Editorial: Oceanographic processes linking nearshore, continental shelf, and shelf break. Frontiers in Marine Science, 10: 1137312.
  • Chang, F. H., J. W. Yang, Lu, H. P. Liu, G. C. Gong, F. K. Shiah, and C. -H. Hsieh (2023) Deterministic Assembly Processes Strengthen the Effects of beta-Diversity on Community Biomass of Marine Bacterioplankton. Msystems, DOI10.1128/msystems.00970-22.
  • Lopez, M.L.D., Y. Y. Lin, S. Q. Schneider, C. -H. Hsieh, F. K. Shiah, and R. J. Machida (2023) Allometric scaling of interspecific RNA transcript abundance to extend the use of metatranscriptomics in characterizing complex communities. Molecular Ecology Resources, 23(1): 52-63.
  • Chen, C. C., P. J. Meng, C. -H. Hsieh, and S. Jan (2022) Plankton Community Respiration and Particulate Organic Carbon in the Kuroshio East of Taiwan. Plants-basel, 11(21): 2909.
  • Dur, G., X. Liu, Y. Sakai, C-H. Hsieh, S. Ban, and S. Souissi (2022) Disrupted seasonal cycle of the warm-adapted and main zooplankter of Lake Biwa, Japan. Journal of Great Lakes Research, 48(5): 1206-1218.
  • Cheng, W. H., C. -H. Hsieh, C. W. Chang, F. K. Shiah, and T. Miki (2022) New index of functional specificity to predict the redundancy of ecosystem functions in microbial communities. Fems Microbiology Ecology, 98(6).
  • Liu, A. C. H., F. H. Chang, J. W. Yang, H. Saito, Y. Umezawa, C. C. Chen, S. Jan, and C.-H. Hsieh (2022) Free-living marine bacterioplankton composition and diversity along the Kuroshio region. Deep-sea Research Part I-oceanographic Research Papers, 183: 103741.
  • Chang, C. W., S. B. Munch, and C.-H. Hsieh (2022) Comments on identifying causal relationships in nonlinear dynamical systems via empirical mode decomposition. Nature Communications, 13(1): 2860.
  • Chang, C. W., T. Miki, H. Ye, S. Souissi, R. Adrian, O. Anneville, H. Agasild, S. Ban, Y. Be’eri-Shlevin, Y. R. Chiang, H. Feuchtmayr, G. Gal, S. Ichise, M. Kagami, M. Kumagai, X. Liu, S. I. S. Matsuzaki, M. M. Manca, P. Noges, R. Piscia, M. Rogora, F. K. Shiah, S. J. Thackeray, C. E. Widdicombe, J. Z. Wu, T. Zohary, and C-H. Hsieh (2022) Causal networks of phytoplankton diversity and biomass are modulated by environmental context. Nature Communications, 13(1): 1140.
  • Lai, Y. Z., C. W. Tu, C-H. Hsieh, and C. Y. Ko (2022) Using Geographical Overlaps to Track Temporal Changes in Species Interactions and Community Coexistence Instability. Frontiers In Marine Science, 9: 751094.
  • Chen, C. C., C. Y. Lu, S. Jan, C-H. Hsieh, and C. C. Chung (2022) Effects of the Coastal Uplift on the Kuroshio Ecosystem, Eastern Taiwan, the Western Boundary Current of the North Pacific Ocean. Frontiers in Marine Science, 9: 796187.
  • Lopez, MLD, Y. Y. Lin, M. Sato, C-H. Hsieh, F. K. Shiah, and, R. J. Machida* (2022) Using metatranscriptomics to estimate the diversity and composition of zooplankton communities. Molecular Ecology Resources, 22 (2): 638-652.
  • Ho, P.-C., N. Okuda, C. F. Yeh, P. L. Wang, G. C. Gong, and C.-H. Hsieh (2021) Carbon and nitrogen isoscape of particulate organic matter in the East China Sea. Progress in Oceanography, 197: 102667.
  • Chang, C. W., T. Miki, M. Ushio, P. J Ke, H. P. Lu, F. K Shiah, and C.-H. Hsieh (2021) Reconstructing large interaction networks from empirical time series data. Ecology Letters, 24(12): 2763-2774.
  • Ho, P.-C., G. C. Gong, C.-H. Hsieh, P. W. Y. Chen, and A. Y. Tsai (2021) Diel Variation of Viral Production in a Coastal Subtropical Marine System. Diversity-basel, 13(9): 426.
  • Pan, R. Y., T. C. Kuo, and C.-H. Hsieh (2021) Hump-shaped relationship between aggregation tendency and body size within fish populations. Ecography, 44(9): 1418-1427.
  • Chen, T. C., P. C. Ho, G. C. Gong, A. Y. Tsai, and C.-H. Hsieh (2021) Finding Approaches to Exploring the Environmental Factors That Influence Copepod-Induced Trophic Cascades in the East China Sea. Diversity-basel, 13(7): 299.
  • Lin, Y. C., C. P. Chin, J. W. Yang, K. P. Chiang, C.-H. Hsieh, G. C. Gong, C. Y. Shih, and S. Y. Chen (2021) How Communities of Marine Stramenopiles Varied with Environmental and Biological Variables in the Subtropical Northwestern Pacific Ocean. Microbial Ecology, DOI:10.1007/s00248-021-01788-7.
  • Huang, Y.-H., H.-H. Tao, G.-C. Gong, and C.-H. Hsieh (2021) Importance of prey size on investigating prey availability of larval fishes. PLoS ONE, 16(5): e0251344.
  • Chang, F. H., Yang, J. W., Liu, A. C. H., Lu, H. P., Gong, G. C., Shiah, F. K., and C.-H. Hsieh (2021) Community Assembly Processes as a Mechanistic Explanation of the Predator-Prey Diversity Relationship in Marine Microbes. Frontiers in Marine Science, 8: 651565.
  • Li, S.-W., P.-H. Lin, T.-Y. Ho, C.-H. Hsieh, and C.-l. Sun (2021) Change in rheotactic behavior patterns of dinoflagellates in response to different microfluidic environments. Scientific Reports, 11(1): 11105.
  • Tao, H. H., G. Dur, P. J. Ke, Souissi, S., and C.-H. Hsieh (2021) Age-specific habitat preference, carrying capacity, and landscape structure determine the response of population spatial variability to fishing-driven age truncation. Ecology and Evolution, 11(11): 6358-6370.
  • Hsu, J., Y. J. Chang, T. Kitakado, M. Kai, B. Li, M. Hashimoto, C.-H. Hsieh, V. Kulik, and K. J. Park (2021) Evaluating the spatiotemporal dynamics of Pacific saury in the Northwestern Pacific Ocean by using a geostatistical modelling approach. Fisheries Research, 235: 105821.
  • Chang, C.-W.., H. Ye, T. Miki, E.R. Deyle, S. Souissi, O. Anneville, R. Adrian, Y.R. Chiang, S. Ichise, M. Kumagai, S.S. Matsuzaki, F.K. Shiah, J.T. Wu, C.-H. Hsieh, and Sugihara, G. (2020) Long-term warming destabilizes aquatic ecosystems through weakening biodiversity-mediated causal networks. Global Change Biology, 26(11), 6413-6423.
  • Lu, H.-P., Y.-H. Shao, J.-H. Wu, and C-H. Hsieh (2020) System Performance Corresponding to Bacterial Community Succession after a Disturbance in an Autotrophic Nitrogen Removal Bioreactor. mSystems, 5(4): e00398-20.
  • Ho, P. C., E. Wong, F. S. Lin, A. R. Sastri, C. Garcia-Comas, N. Okuda, F. K. Shiah, G. C. Gong, R. S. W. Yam, and C.-H. Hsieh (2020) Prey stoichiometry and phytoplankton and zooplankton composition influence the production of marine crustacean zooplankton. Progress in Oceanography, 186: 102369.
  • Wang, J.-Y., T.-C. Kuo, and C.-H. Hsieh (2020) Causal effects of population dynamics and environmental changes on spatial variability of marine fishes. Nature Communications, 11(1): 2635.
  • Ho, P. C., C. W. Chang, F. K. Shiah, P.-L. Wang, C.-H. Hsieh, and K.H. Andersen (2020) Body Size, Light Intensity, and Nutrient Supply Determine Plankton Stoichiometry in Mixotrophic Plankton Food Webs. American Naturalist, 195(4): E100-E111.
  • Cheng, W. H., H. P. Lu, C. C. Chen, S. Jan, and C.-H. Hsieh (2020) Vertical Beta-Diversity of Bacterial Communities Depending on Water Stratification. Frontiers in Microbiology, 11: 499.
  • Lin, F. S., P. C. Ho, A. R. Sastri, C. C. Chen, G. C. Gong, S. Jan, and C.-H. Hsieh (2020) Resource availability affects temporal variation of phytoplankton size structure in the Kuroshio east of Taiwan. Limnology and Oceanography, 65(2): 236-246.
  • Lin, F. S.., P. C. Ho, A.R. Sastri, C. C. Chen, G. C. Gong, S. Jan, and C.-H. Hsieh (2020) Resource availability affects temporal variation of phytoplankton size structure in the Kuroshio east of Taiwan. Limnology and Oceanography, 9999: 1-11.
  • Anneville, O., C. W. Chang, G. Dur, S. Souissi, F. Rimet, and C.-H. Hsieh (2019) The paradox of re-oligotrophication: the role of bottom-up versus top-down controls on the phytoplankton community. Oikos, 128(11): 1666-1677.
  • Huang, W. B., C.-H. Hsieh, T. S. Chiu, W. T. Hsu, and C. S. Chen, (2019) CPUE standardization for the Pacific saury Cololabis saira fishery in the Northwest Pacific. Journal of Marine Science and Technology-Taiwan, 27(5): 472-480.
  • Ye, L., C. W. Chang, S. S. Matsuzaki, N. Takamura, C. E. Widdicombe, and C.-H. Hsieh (2019) Functional diversity promotes phytoplankton resource use efficiency. Journal of Ecology, 107(5): 2353-2363.
  • Lu, H. P., Y. C. Yeh, F. K. Shiah, G. C. Gong, and C.-H. Hsieh (2019) Evolutionary constraints on species diversity in marine bacterioplankton communities. ISME Journal, 13(4): 1032-1041.
  • Chang, Y. H., Y. H. Lin, C.-H. Hsieh, and Y. M. Chen (2019) Aurantiochytrium dietary supplements reduce intra-cohort cannibalism among orange-spotted groupers (Epinephelus coioides) by modulating brain 5-HT and serum cortisol. Aquaculture, 502: 202-211.
  • Arranz, I., C.-H. Hsieh, T. Mehner, and S. Brucet (2019) Systematic deviations from linear size spectra of lake fish communities are correlated with predator-prey interactions and lake-use intensity. Oikos, 128(1): 33-44.
  • Chang, Y. J., K. W. Lan, W. A. Walsh, J. Hsu, and C.-H. Hsieh (2019) Modelling the impacts of environmental variation on habitat suitability for Pacific saury in the Northwestern Pacific Ocean. Fisheries Oceanography, 28(3): 291-304.
  • Grziwotz, F., J. F. Strauss, C.-H. Hsieh, and A. Telschow (2018) Empirical Dynamic Modelling Identifies different Responses of Aedes Polynesiensis Subpopulations to Natural Environmental Variables. Scientific Reports, 8: 16768.
  • Itoh, M., Kojima, H., Ho, P. C., Chang, C. W., Chen, T. Y., Hsiao, S. S. Y., Kobayashi, Y., Fujibayashi, M., Kao, S. J., Hsieh, C. H., Fukui, M., Okuda, N., Miki, T., Shiah, F. K. (2018) Integrating isotopic, microbial, and modeling approaches to understand methane dynamics in a frequently disturbed deep reservoir in Taiwan (vol 32, pg 861, 2017). Ecological Research, 33 (5):1083-1084.
  • Dornelas, M., L. H. Antao, F. Moyes, A. E. Bates, A. E. Magurran, D. Adam, C. A. Chen, C.-H. Hsieh et al. (2018) BioTIME: A database of biodiversity time series for the Anthropocene. Global Ecology and Biogeography, 27(7): 760-786.
  • Yang, J. W., W. X. Wu, C. C. Chung, K. P. Chiang, G. C. Gong, and C.-H. Hsieh (2018) Predator and prey biodiversity relationship and its consequences on marine ecosystem functioning-interplay between nanoflagellates and bacterioplankton. ISME Journal, 12 (6): 1532-1542.
  • Tu, C. Y., K. T. Chen, and C.-H. Hsieh (2018) Fishing and temperature effects on the size structure of exploited fish stocks. Scientific Reports, 8: 1732.
  • Ushio, M., C.-H. Hsieh, R. Masuda, E. R. Deyle, H. Ye, C. W. Chang, G. Sugihara, and M. Kondoh, (2018) Fluctuating interaction network and time-varying stability of a natural fish community. Nature, 554(7692): 360-363.
  • Wu, W. X., H. P. Lu, A. Sastri, Y. C. Yeh, G. C. Gong, W. C. Chou, and C.H. Hsieh (2018) Contrasting the relative importance of species sorting and dispersal limitation in shaping marine bacterial versus protist communities. ISME Journal, 12(2): 485-494.
  • Lu, H. P., P. Y. Liu, Y. B. Wang, J. F. Hsieh, H. C. Ho, S. W. Huang, C. Y. Lin, C. H. Hsieh, and H. T. Yu (2018) Functional Characteristics of the Flying Squirrel’s Cecal Microbiota under a Leaf-Based Diet, Based on Multiple Meta-Omic Profiling. Frontiers in Microbiology, 8: 2622.
  • Miki, T., Yokokawa, T., Ke, P. J., Hsieh, I. F., Hsieh, C. H., Kume, T., Yoneya, K., Matsui, K. (2018) Statistical recipe for quantifying microbial functional diversity from EcoPlate metabolic profiling. Ecological Research, 33 (1): 249-260.
  • Weng, C. Y., C. H. Hsieh, and M. H. Su (2017) Recruitment dynamics mediated by ungulate herbivory can affect species coexistence for tree seedling assemblages. Taiwania, 62 (3): 283-293.
  • Chen, I. C., C. H. Hsieh, M. Kondoh, H. J. Lin, T. Miki, M. Nakamura, T. Ohgushi, J. Urabe, and T. Yoshida (2017) Filling the gaps in ecological studies of socioecological systems. Ecological Research, 32(6): 873-885.
  • Itoh, M, H. Kojima, P. C. Ho, C. W. Chang, T. Y. Chen, S. S. Y. Hsiao, Y. Kobayashi, M. Fujibayashi, S. J. Kao, C. H. Hsieh, M. Fukui, N. Okuda, T. Miki, and F. K. Shiah, (2017) Integrating isotopic, microbial, and modeling approaches to understand methane dynamics in a frequently disturbed deep reservoir in Taiwan. Ecological Research, 32 (6): 861-871.
  • Weng, C. Y., K. C. Yang, C. F. Hsieh, C. H. Hsieh, and M. H. Su (2017) Local neighborhood communities in the understory play a critical role by affecting regeneration niches and subsequent community assembly in a montane cloud forest. Ecological Research, 32 (6): 821-833.
  • Chang, C. W., M. Ushio, and C.H. Hsieh (2017) Empirical dynamic modeling for beginners. Ecological Research, 32 (6): 785-796.
  • Iwayama, A., H. Ogura, Y. Hirama, C. W. Chang, C. H. Hsieh, and M. Kagami, (2017) Phytoplankton species abundance in Lake Inba (Japan) from 1986 to 2016. Ecological Research, 32 (6): 783-783.
  • Nakamura, M., C. H. Hsieh, T. Miki, and M. Kondoh (2017) Establishment of an ecological research network involving Taiwan and Japan: developing a better understanding of ecological phenomena unique to East Asia. Ecological Research, 32 (6): 779-781.
  • Okuda, N., Y. Sakai, K. Fukumori, S. M. Yang, C. H. Hsieh, and F. K. Shiah (2017) Food web properties of the recently constructed, deep subtropical Fei-Tsui Reservoir in comparison with the ancient Lake Biwa. Hydrobiologia, 802 (1):199-210.
  • Telschow, A., F. Grziwotz, P. Crain, T. Miki, J. W. Mains, G. Sugihara, S. L. Dobson, and C. H. Hsieh (2017) Infections of Wolbachia may destabilize mosquito population dynamics. Journal of Theoretical Biology, 428: 98-105.
  • Chen, C. C., G. C. Gong, W. C. Chou, C. C. Chung, C. H. Hsieh, F, K. Shiah, and K. P. Chiang (2017) The influence of episodic flooding on a pelagic ecosystem in the East China Sea. Biogeosciences, 14 (10): 2597-2609.
  • Wong, E., A. R. Sastri, F. S. Lin, and C. H. Hsieh (2017) Modified FlowCAM procedure for quantifying size distribution of zooplankton with sample recycling capacity. PLoS One, 12 (4): 10.1371/journal.pone.0175235.
  • Dakos, V., S. M. Glaser, C. H. Hsieh and G. Sugihara (2017) Elevated nonlinearity as an indicator of shifts in the dynamics of populations under stress. Journal of the Royal Society Interface, 14 (128): 20160845.
  • Wu, W., R. Logares, B. Huang and C. H. Hsieh (2017) Abundant and rare picoeukaryotic sub-communities present contrasting patterns in marginal seas of the northwestern Pacific Ocean. Environmental Microbiology. 19(1): 287-300.
  • Lu, H. P., Y. C. Yeh, A. Sastri, F. K. Shiah, G. C. Gong, and C. H. Hsieh (2016) Evaluating community-environment relationships along fine to broad taxonomic resolutions reveals evolutionary forces underlying community assembly. ISME Journal. 10: 2867-2878.
  • Ho, P. C., Okuda, N., T. Miki, M. Itoh, F. K. Shiah, C. W. Chang, , S. S. Y. Hsiao, S. J. Kao, M. Fujibayashi, and C. H. Hsieh (2016) Summer profundal hypoxia determines the coupling of methanotrophic production and the pelagic food web in a subtropical reservoir. Freshwater Biology, 61(10): 1694-1706.
  • Kuo T. C., S. Mandal, A. Yamauchi, and C. H. Hsieh (2016) Life history traits and exploitation affect the spatial mean-variance relationship in fish abundance. Ecology, 97: 1251-1259.
  • García-Comas C., Y. C. Lee, C. Y. Chang, G. C. Gong, and C. H. Hsieh (2016) Comparison of copepod species-based and individual-size-based community structuring. Journal of Plankton Research, 38(4): 1006-1020.
  • Tsai, C. H., C. H. Hsieh, and N. Takefumi (2016) Predator–prey mass ratio revisited: does preference ofrelative prey body size depend on individual predatorsize? Functional Ecology, 30(12): 1979-1987.
  • Chen, T. Y., J. H. Tai, C. Y. Ko, C. H. Hsieh, C. C. Chen, N. Z. Jiao, H. B. Liu, and F. K. Shiah (2016) Nutrient pulses driven by internal solitary waves enhance heterotrophic bacterial growth in the South China Sea. Environmental Microbiology, 18 (12): 4312-4323.
  • Garcia-Comas C., A. R. Sastri, L. Ye, C. Y. Chang, F. S. Lin, M. S. Su, G. C. Gong, and C. H. Hsieh (2016) Prey size diversity hinders biomass trophic transfer and predator size diversity promotes it in planktonic communities. Proceedings of the Royal Society B-Biological Sciences, 283(1824): 20152129.
  • Tsai C. H., Y. C. Lin, T. Wiegand, T. Nakazawa, S. H. Su, C. H. Hsieh, and T. S. Ding (2015) Individual species-area relationship of woody plant communities in a heterogeneous subtropical monsoon rainforest. PLoS ONE, 10(4): e0124539.
  • Ye H., Beamish R. J., Glaser S. M., Grant S. C. H., Hsieh C. H., Richards L. J., Schnute J. T., and G. Sugihara (2015) Equation-free mechanistic ecosystem forecasting using empirical dynamic modeling. Proceedings of The National Academy of Sciences USA, 112 (13): E1569-E1576.
  • Tu C. Y., Tian Y. J., and C. H. Hsieh (2015) Effects of climate on temporal variation in the abundance and distribution of the demersal fish assemblage in the Tsushima Warm Current region of the Japan Sea. Fisheries Oceanography, 24(2): 177-189.
  • Yeh Y. C., Peres-Neto P. R., S. W. Huang, Y. C. Lai, C. Y. Tu, F. K. Shiah, G. C. Gong, and C. H. Hsieh (2015) Determinism of bacterial metacommunity dynamics in the southern East China Sea varies depending on hydrography. Ecography, 38(2): 192-212.
  • Bai, M. L., F. S. Ling, Y. C. Lee, G. C. Gong, and C. H. Hsieh (2015) Trophic structure of the pelagic food web in the East China Sea. Zoological Studies, 54: 7.
  • Tsai C. H., T. Miki, C. W. Chang, Ishikawa K., Ichise S., Kumagai M., and C. H. Hsieh (2014) Phytoplankton functional group dynamics explain species abundance distribution in a directionally changing environment, Ecology 95(12): 3335-3343.
  • Glaser S. M., M. J. Fogarty, H. Liu, I. Altman, C. H. Hsieh, L. Kaufman, A. D. MacCall, A.A. Rosenberg, H. Ye, and G. Sugihara (2014) Complex dynamics may limit prediction in marine fisheries. Fish and Fisheries, 15(4): 616-633.
  • Lu, H. P., Y. C. Lai, S. W. Huang, H. C. Chen, C. H. Hsieh, and H. T. Yu (2014) Spatial heterogeneity of gut microbiota reveals multiple bacterial communities with distinct characteristics. Scientific Reports, 4: 6185.
  • Chang N. N., J. C. Shiao, G. C. Gong , S. J. Kao, and C. H. Hsieh (2014) Stable isotope ratios reveal food source of benthic fish and crustaceans along a gradient of trophic status in the East China Sea. Continental Shelf Research, 84: 23-34.
  • Chang C. W., F. K. Shiah, J. T. Wu, T. Miki, and C. H. Hsieh (2014) The role of food availability and phytoplankton community dynamics in the seasonal succession of zooplankton community in a subtropical reservoir. Limnologica, 46: 131-138.
  • Chang, C. W., T. Miki, F. K. Shiah, S. J. Kao, J. T. Wu, A. R. Sastri, and C. H. Hsieh (2014) Linking secondary structure of individual size distribution with nonlinear size-trophic level relationship in food webs. Ecology, 95(4): 897-909.
  • Liu, H., M. J. Fogarty, J. A. Hare, C. H. Hsieh, S. M. Glaser, H. Ye, E. Deyle, and G. Sugihara (2014) Modeling dynamic interactions and coherence between marine zooplankton and fishes linked to environmental variability. Journal of Marine Systems, 131: 120-129.
  • Garcia-Comas, C., C. Y. Chang, L. Ye., A.R. Sastri, Y. C. Lee, G. C. Gong, and C. H. Hsieh (2014) Mesozooplankton size structure in response to environmental conditions in the East China Sea: How much does size spectra theory fit empirical data of a dynamic coastal area? Progress in Oceanography, 121:141-157.
  • Lin, K.Y., Sastri, A.R., and C. H. Hsieh (2013) An alternative kernel-based method for estimating copepod growth rates from multimodal biomass distributions in artificial cohort experiments. Zoological Studies, 52:14.
  • Ye, L., C. Y. Chang, C. Garcia-Comas, G. C. Gong, and C. H. Hsieh (2013) Increasing zooplankton size diversity enhances the strength of top-down control on phytoplankton through diet niche partitioning. Journal of Animal Ecology, 82(5): 1052-1060.
  • Chang, F. H., E. C. Marquis, C. W. Chang, G. C. Gong, and C. H. Hsieh (2013) Scaling of growth rate and mortality with size and its consequence on size spectra of natural microphytoplankton assemblages in the East China Sea. Biogeosciences, 10: 5267-5280.
  • Hsu, S. B., C. J. Lin, C. H. Hsieh, and K. Yoshiyama (2013) Dynamics of Phytoplankton Communities Under Photoinhibition. Bulletin of Mathematical Biology, 75: 1207-1232.
  • Liu, H. C., C. Y. Shih, G. C. Gong, T. Y. Ho, F. K. Shiah, C. H. Hsieh, and J. Chang (2013) Discrimination between the influences of river discharge and coastal upwelling on summer microphytoplankton phosphorus stress in the East China Sea. Continental Shelf Research, 60: 104-112.
  • Deyle, E., M.F. Fogarty, C. H. Hsieh, L. Kaufman, A. MacCall, S. B. Munch, C. Perretti, H. Ye, and G. Sugihara (2013) Predicting climate effects on Pacific sardine. Proceedings of the National Academy of Sciences USA, 110: 6430-6435.
  • Ho, P. C., C.W Chang, C. H. Hsieh, F. K. Shiah, and T. Miki (2013) Effects of increasing nutrient supply and omnivorous feeding on the slope of size spectrum: a size-based nutrient-phytoplankton-zooplankton model. Population Ecology, 55: 247-259
  • Lin, K. Y., A. R. Sastri, G. C. Gong, and C. H. Hsieh (2013) Copepod community growth rates in relation to body size, temperature, and food availability in the East China Sea – a test of metabolic theory. Biogeosciences, 10: 1-16
  • Lin, W. T., C. H. Hsieh, and T. Miki (2013) Difference in adaptive dispersal abilities can promote species coexistence in fluctuating environments. PLoS ONE, 8: e55218.
  • Briones, J. C., C. H. Tsai, T. Nakazawa, Y. Sakai, R. D. Papa, C. H. Hsieh, and N. Okuda (2012) Long-term change in the diet of Gymnogobius isaza from Lake Biwa, Japan: effects of body size and prey availability. PLoS ONE, 7: e53167.
  • Lu, H. P., Y. B. Wang, S. W. Huang, C. Y. Lin, M. Wu, C. H. Hsieh, and H. T. Yu (2012) Metagenomic analysis reveals a functional signature for biomass degradation by cecal microbiota in the leaf-eating flying squirrel (Petaurista alborufus lena). BioMed Central Genomics, 13: 466.
  • Chiao, L. Y., C. H. Hsieh, and T. S. Chiu (2012) Exploring spatiotemporal ecological variations by the multiscale interpolation. Ecological Modelling, 246: 26-33.
  • Sugihara, G., R. May, H. Ye, C. H. Hsieh, E. Deyle, M. Fogarty, and S. Munch (2012) Detecting causality in complex ecosystems. Science, 338: 496-500
  • Liu, H., M. J Fogarty, S. M. Glaser, I. Altman, C. H. Hsieh, L. Kaufman, A. A. Rosenberg, and G. Sugihara (2012) Nonlinear dynamic features and co-predictability of the Georges Bank fish community. Marine Ecology-Progress Series. 464: 195-207.
  • Tzeng, W. N., Y. H. Tseng, Y. S. Han, C. C. Hsu, C. W. Chang, E. Di Lorenzo, and C. H. Hsieh (2012) Evaluation of Multi-Scale Climate Effects on Annual Recruitment Levels of the Japanese Eel, Anguilla japonica, to Taiwan. PLoS ONE, 7(2): e30805.
  • Chang, C. Y., P. C. Ho, A. R. Sastri, Y. C. Lee, G. C. Gong, and C. H. Hsieh (2012) Methods of training set construction: Towards improving performance for automated mesozooplankton image classification systems. Continental Shelf Research, 36: 19-28.
  • Tu, C. Y., Y. H. Tseng, T. S. Chiu, M. L. Shen, and C. H. Hsieh (2012) Using coupled fish behavior-hydrodynamic model to investigate spawning migration of Japanese anchovy, Engraulis japonicus, from the East China Sea to Taiwan. Fisheries Oceanography, 21(4): 255-268.
  • Sugihara, G., J. Beddington, C. H. Hsieh, E. Deyle, M. Fogarty, S. Glaser, R. Hewitt, A. Hollowed, M. Mangle, R. M. May, S. Munch, C. Perretti, A. Rosenberg, S. Sandin, O. Shelton, and H. Ye (2011) Are exploited fish population stable? Proceedings of the National Academy of Sciences USA, 108: E1224-E1225.
  • Ye, L., C. Y. Chang, and C. H. Hsieh (2011) Bayesian model for semi-automated zooplankton classification with predictive confidence and rapid category aggregation. Marine Ecology Progress Series. 441: 185-196
  • Hsieh, C. H., Y. Sakai, S. Ban, K. Ishikawa, T. Ishikawa, S. Ichise, N. Yamamura, and M. Kumagai (2011) Eutrophication and warming effects on long-term variation of zooplankton in Lake Biwa. Biogeosciences. 8: 1383-1399.
  • Gong, G. C., K. K. Liu, K. P. Chiang, T. M. Hsiung, J. Chang, C. C. Chen, C. C. Hung, W.C. Chou, C. C. Chung, H. Y. Chen, F. K. Shiah, A.Y. Tsai, C. H. Hsieh, J. J. Shiao, C. M. Tseng, S. C. Hsu, H. J. Lee, M. A. Lee, I. I. Lin, and F. Tsai (2011) Yangtze River floods enhance coastal ocean phytoplankton biomass and potential fish production. Geophysical Research Letters. 38: L13603
  • Hsieh, C. H., K. Ishikawa, Y. Sakai, T. Ishikawa, S. Ichise, Y. Yamamoto, T. C. Kuo, H. D. Park, N. Yamamura, and M. Kumagai (2010) Phytoplankton community reorganization driven by eutrophication and warming in Lake Biwa. Aquatic Sciences. 72: 467-483
  • Hsieh, C. H., A. Yamauchi, T. Nakazawa, and W. F. Wang (2010) Fishing effects on age and spatial structures undermine population stability of fishes. Aquatic Sciences. 72: 165-178
  • Nakazawa, T., Y. Sakai, C. H. Hsieh, T. Koitabashi, I. Tayasu, N. Yamamura, and N. Okuda. (2010) Is the body size and trophic niche position time-invariant in a freshwater goby? First stable isotope evidence. PLoS ONE 5: e9120
  • Hsieh, C. H., H. J. Kim, W. Watson, E. Di Lorenzo, and G. Sugihara (2009) Climate-driven changes in abundance and distribution of larvae of oceanic fishes in the southern California region. Global Change Biology. 15: 2137-2152.
  • Hsieh, C. H., C. S. Chen, T. S. Chiu, K. T. Lee, Shieh, H. Z., J. Y. Pan, and M. A. Lee (2009) Time series analysis reveal transient relationships between abundance of larval anchovy and environmental variables in the coastal waters southwest of Taiwan. Fisheries Oceanography. 18: 102-117.
  • Chan, Y. F., A. Y. Tsai, K. P. Chiang, and C. H. Hsieh (2009) The grazing impact of the different size of pigmented nanoflagellates on Synechococcus in the coastal ecosystem of subtropical western Pacific. Microbial Ecology. 58: 548-557
  • Ko, C. Y., R. S., Lin, T. S. Ding, C. H., Hsieh, and P. F. Lee. (2009) Identifying biodiversity hotspots by predictive models: a case study using Taiwan’s endemic bird species. Zoological Studies, 48: 418-431.
  • Hsieh, C. H., C. Anderson, and G. Sugihara (2008) Extending nonlinear analysis to short ecological time series. American Naturalist. 171: 71-80.
  • Hsieh, C. H., S. C. Reiss, R. P. Hewitt, and G. Sugihara (2008) Spatial analysis shows fishing enhances the climatic sensitivity of marine fishes. Canadian Journal of Fisheries and Aquatic Sciences. 65: 947-961.
  • Anderson, C. N. K., C. H. Hsieh, S. A. Sandin, R. Hewitt, A. Hollowed, J. Beddington, R. M. May, and G. Sugihara (2008). Why fishing magnifies fluctuations in fish abundance. Nature. 452: 835-839.
  • Ohman, M. D. and C. H. Hsieh (2008) Spatial differences in mortality of Calanus pacificus within the California Current System. Journal of Plankton Research. 30: 359-366.
  • Maye, A., C. H. Hsieh, G. Sugihara, and B. Brembs (2007) Order in spontaneous behavior. PloS One. 1: e443.
  • Hsieh, C. H., S. C. Reiss, J. R. Hunter, J. R. Beddington, R. M. May, and G. Sugihara (2006) Fishing elevates variability in the abundance of exploited species. Nature, 443: 859-862.
  • Hsieh, C. H., and M. D. Ohman (2006) Biological responses to environmental forcing: The Linear Tracking Window hypothesis. Ecology, 87: 1932-1938.
  • Hsieh, C. H., S. M. Glaser, A. J. Lucas, and G. Sugihara (2005) Distinguishing random environmental fluctuations from ecological catastrophes for the North Pacific Ocean. Nature, 435: 336-340.
  • Hsieh, C. H., C. Reiss, W. Watson, M.J. Allen, J. R. Hunter, R. N. Lea, R. H. Rosenblatt, P. E. Smith, and G. Sugihara (2005) A comparison of long-term trends and variability in populations of larvae of exploited and unexploited fishes in the Southern California region: a community approach. Progress in Oceanography, 67: 160-185.
  • Hsieh, C. H., C. S. Chen, and T. S. Chiu (2005) Composition and abundance of copepod and ichthyoplankton in the Taiwan Strait (western North Pacific) in relation to seasonal marine conditions. Marine and Freshwater Research, 56: 153-161.
  • Hsieh, C. H., T. S. Chiu, and C. T. Shih (2004) Copepod diversity and composition as indicators of the intrusion of the Kuroshio Branch Current into the Northern Taiwan Strait in Spring, 2000. Zoological Studies, 43: 393-403.
  • Hsieh, C. H. and T. S. Chiu (2002) Summer spatial distribution of copepods and fish larvae in relation to hydrography in the northern Taiwan Strait. Zoological Studies, 41: 85-98.