{"id":30581,"date":"2024-05-16T15:32:58","date_gmt":"2024-05-16T07:32:58","guid":{"rendered":"https:\/\/www.oc.ntu.edu.tw\/?p=30581"},"modified":"2026-03-01T14:05:21","modified_gmt":"2026-03-01T06:05:21","slug":"takeshi-miki","status":"publish","type":"post","link":"https:\/\/www.oc.ntu.edu.tw\/en\/staffs-en\/retired-faculty\/30581\/","title":{"rendered":"Takeshi Miki"},"content":{"rendered":"\n<h2 class=\"wp-block-heading\">Research Achievements\/Publications\uff1a<\/h2>\n\n\n\n<p>A. Journal Papers<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>C. -W. Chang, C. -H. Hsieh, M. Kagami, W. -H. Cheng, and T. Miki* (2026) Biodiversity effects on ecological stability through ecosystem-level feedback. ECOLOGY, 107(1), e70298.<\/li>\n\n\n\n<li>T. Miki*, C. -W. Chang, P. -J. Ke, A. Telschow, C. -H. Tsai, M. Ushio, and C. -H. Hsieh (2025) How to quantify interaction strengths? A critical rethinking of the interaction Jacobian and evaluation methods for non-parametric inference in time series analysis. Physica D-Nonlinear Phenomena, 476, 134613.<\/li>\n\n\n\n<li>T. Miki*, P. -J. Ke (2024) Macroscale vertical power-law distribution of bacteria in dark oceans can emerge from microscale bacteria-particle interactions. Journal of Theoretical Biology, 595, 111956.<\/li>\n\n\n\n<li>T. Frenken, T. Miki, M. Kagami, D.B. Van de Waal, E. Van Donk, and A.S. Gsell, * (2020) The potential of zooplankton in constraining chytrid epidemics in phytoplankton hosts. Ecology, 101(1), DOI: 10.1002\/ecy.2900.<\/li>\n\n\n\n<li>Y. Kato*, M. Kondoh, N. F. Ishikawa, H. Togashi, Y. Kohmatsu, M. Yoshimura, C. Yoshimizu, T. F. Haraguchi, Y. Osada, N. Ohte, N. Tokuchi, N. Okuda, T. Miki, and I. Tayasu (2018) Using food network unfolding to evaluate food-web complexity in terms of biodiversity: theory and applications. Ecology Letters, 21 (7), 1065-1074.<\/li>\n\n\n\n<li>T. Miki, T. Yokokawa, P. J. Ke, I. F. Hsieh, C. H. Hsieh, T. Kume, K. Yoneya, and K. Matsui* (2018) Statistical recipe for quantifying microbial functional diversity from EcoPlate metabolic profiling. Ecological Research, 33 (1), 249-260.<\/li>\n\n\n\n<li>I. C. Chen, C. H. Hsieh, M. Kondoh, H. J. Lin, T. Miki*, M. Nakamura, T. Ohgushi, J. Urabe, and T. Yoshida (2017) Filling the gaps in ecological studies of socioecological systems. Ecological Research, 32 (6), 873-885.<\/li>\n\n\n\n<li>M. Itoh, H. Kojima, P. C. Ho, C. W. Chang, T. Y. Chen, S. S. Y. Hsiao, Y. Kobayashi, M. Fujibayashi, S. J. Kao, C. H. Hsieh, M. Fukui, N. Okuda, T. Miki*, and F. K. Shiah*, (2017) Integrating isotopic, microbial, and modeling approaches to understand methane dynamics in a frequently disturbed deep reservoir in Taiwan. Ecological Research, 32 (6), 861-871.<\/li>\n\n\n\n<li>M. Nakamura*, C. H. Hsieh, T. Miki, and M. Kondoh (2017) Establishment of an ecological research network involving Taiwan and Japan: developing a better understanding of ecological phenomena unique to East Asia. Ecological Research, 32 (6), 779-781.<\/li>\n\n\n\n<li>T. Frenken, E. Alacid, S. A. Berger, E. C. Bourne, M. Gerphagnon, H. P. Grossart, A. S. Gsell, B. W. Ibelings, M. Kagami, F. C. Kupper, P. M. Letcher, A. Loyau, T. Miki, J. C. Nejstgaard, S. Rasconi, A. Rene, T. Rohrlack, K. Rojas-Jimenez, D. S. Schmeller, B. Scholz, K. Seto, T. Sime-Ngando, A. Sukenik, D. B. Van de Waal, S. Van den Wyngaert, E. Van Donk, J. Wolinska, C. Wurzbacher, and R. Agha* (2017) Integrating chytrid fungal parasites into plankton ecology: research gaps and needs. Environmental Microbiology, 19 (10), 3802-3822.<\/li>\n\n\n\n<li>A. Telschow, F. Grziwotz, P. Crain, T. Miki, J. W. Mains, G. Sugihara, S. L. Dobson, and C. H. Hsieh* (2017) Infections of Wolbachia may destabilize mosquito population dynamics. Journal of Theoretical Biology, 428, 98-105.<\/li>\n\n\n\n<li>I. F. Hsieh, T. Kume*, M. Y. Lin, C. H. Cheng, and T. Miki (2016) Characteristics of soil CO2 efflux under an invasive species, Moso bamboo, in forests of central Taiwan. Trees &#8211; Structure and Function, 30 (5), 1749-1759.<\/li>\n\n\n\n<li>P. C. Ho*, T. Miki, M. Itoh, F. K. Shiah, C. W. Chang, S. S. Y. Hsiao, S. J. Kao, M. Fujibayashi, and C. H. Hsieh (2016) Summer profundal hypoxia determines the coupling of methanotrophic production and the pelagic food web in a subtropical reservoir. Freshwater Biology, 61(10), 1694-1706.<\/li>\n\n\n\n<li>K. Ikeda*, and T. Miki (2016) Regime shift in a phytoplankton\u2013phosphorus model with vertical structure and seasonality, Iktamkang Journal of Mathematics, 47(1), 109-125.<\/li>\n\n\n\n<li>T. Miki, and H. Doi (2016) Leaf phenological shifts and plant-microbe-soil interactions can determine forest productivity and nutrient cycling under climate change in an ecosystem model. Ecological Research, 31(2), 263-274.<\/li>\n\n\n\n<li>K. Hamasaki*, A. Taniguchi, Y. Tada, R. Kaneko, and T. Miki (2016) Active populations of rare microbes in oceanic environments as revealed by bromodeoxyuridine incorporation and 454 tag sequencing. GENE, 576 (2), 650-656, SI.<\/li>\n\n\n\n<li>P. J. Ke*, and T. Miki (2015) Incorporating the soil environment and microbial community into plant competition theory. Frontiers in Microbiology, 6, Article 1066.<\/li>\n\n\n\n<li>M. Itoh*, Y. Kobayashi, T. Y. Chen, T. Tokida, M. Fukui, H. Kojima, T. Miki, I. Tayasu, F. K. Shiah, and N. Okuda, (2015) Effect of interannual variation in winter vertical mixing on CH4 dynamics in a subtropical reservoir. Journal of Geophysical Research-Biogeosciences, 120(7), 1246-1261.<\/li>\n\n\n\n<li>K. Yoneya, and T. Miki* (2015) Co-evolution of foraging behaviour in herbivores and their natural enemies predicts multifunctionality of herbivore-induced plant volatiles. Functional Ecology, 29 (4), 451-461.<\/li>\n\n\n\n<li>P.J. Ke, T. Miki,* and T.S. Ding (2015) The soil microbial community predicts the importance of plant traits in plant-soil feedback, New Phytologist, 206(1), 329-341.<\/li>\n\n\n\n<li>C. H. Tsai, T. Miki, C. W. Chang, K. Ishikawa, S. Ichise, M. Kumagai, and C. H. Hsieh* (2014) Phytoplankton functional group dynamics explain species abundance distribution in a directionally changing environment. Ecology, 95(12), 3335-3343.<\/li>\n\n\n\n<li>T. Enoki, T. Nakashizuka, S. Nakano, T. Miki, Y.P. Lin, and M.Nakaoka, (2014) Progress in the 21st century: a Roadmap for the&nbsp;<em>Ecological Society of Japan<\/em>. Ecological Research, 29, 357-368.<\/li>\n\n\n\n<li>C. W. Chang*, F. K. Shiah, J. T. Wu, T. Miki, and C. H. Hsieh, (2014) The role of food availability and phytoplankton community dynamics in the seasonal succession of zooplankton community in a subtropical reservoir. Limnologica, 46, 131-138.<\/li>\n\n\n\n<li>M. Kagami*, T. Miki, and G. Takimoto (2014) Mycoloop: chytrids in aquatic food webs. Frontiers in Microbiology, 5, 166.<\/li>\n\n\n\n<li>C. W. Chang, T. Miki, F. K. Shiah, S. J. Kao, J. T. Wu, A. R. Sastri, and C. H. Hsieh* (2014) Linking secondary structure of individual size distribution with nonlinear size-trophic level relationship in food webs. Ecology, 95(4), 897-909.<\/li>\n\n\n\n<li>T. Miki, T. Yokokawa, K. Matsui* (2014) Biodiversity and multifunctionality in a microbial community: a novel theoretical approach to quantify functional redundancy. Proceedings of the Royal Society B-Biological Sciences, 281(1776), 20132498.<\/li>\n\n\n\n<li>M. Ushio*, T. Miki, T. C. Balser (2013) A Coexisting Fungal-Bacterial Community Stabilizes Soil Decomposition Activity in a Microcosm Experiment. PLoS ONE, 8(11), e80320.<\/li>\n\n\n\n<li>C. Motegi*, T. Nagata, T. Miki, M G. Weinbauer, L. Legendre, F. Rassoulzadegan (2013) Interactive Effects of Viral and Bacterial Production on Marine Bacterial Diversity. PLoS ONE, 8(11), e76800 .<\/li>\n\n\n\n<li>P.C. Ho, C. W. Chang, C. H. Hsieh, F. K. Shiah, T. Miki* (2013) Effects of increasing nutrient supply and omnivorous feeding on the size spectrum slope: a size-based nutrient-phytoplankton-zooplankton model. Population Ecology, DOI: 10.1007\/S10144-013-0368-3 .<\/li>\n\n\n\n<li>W. T. Lin*, C. H. Hsieh, and T. Miki (2013) Difference in adaptive dispersal ability can promote species coexistence in fluctuating environments. PLoS ONE, 8(2), e55218.<\/li>\n\n\n\n<li>T. Miki* (2012) Microbe-mediated plant-soil feedback and its roles in a changing world. Ecological Research, 27(3), 509-520.<\/li>\n\n\n\n<li>S. Fukui*, T. Miki, and M. Shimada (2012) Consumers can enhance ecosystem productivity and stability in changing environments. Population Ecology, 54(1), 177-186.<\/li>\n\n\n\n<li>Y. Tada*, A. Taniguchi, I. Nagao, T. Miki, M. Uematsu, A. Tsuda, and K. Hamasaki (2011) Differing growth Responses of major phylogenetic groups of marine bacteria to natural phytoplankton blooms in the western North Pacific Ocean. Applied and Environmental Microbiology, 77, 4055-4065.<\/li>\n\n\n\n<li>J. Y. Wakano*, K. Ikeda, T. Miki*, and M. Mimura (2011) Effective dispersal rate is a function of habitat size and corridor shape: mechanistic formulation of a two-patch compartment model for spatially continuous systems. Oikos, 120, 1712-1720.<\/li>\n\n\n\n<li>T. Miki*, G. Takimoto, and M. Kagami (2011) Roles of parasitic fungi in aquatic food webs: a theoretical approach. Freshwater Biology, 56,1173-1183.<\/li>\n\n\n\n<li>Y. Saito, and T. Miki* (2010) Species coexistence under resource competition and intra- and interspecific direct competition in the chemostat. Theoretical Population Biology, 78, 173-182.<\/li>\n\n\n\n<li>T. Miki*, M. Ushio, S. Fukui, and M. Kondoh. (2010) Functional diversity of microbial decomposers facilitates plant coexistence in a plant-microbe-soil feedback model. Proceedings of the National Academy of Sciences, USA, doi: 10.1073\/pnas.0914281107.<\/li>\n\n\n\n<li>S. Utsumi*, Y. Ando, and T. Miki (2010) Linkages among trait-mediated indirect effects: a new framework for the indirect interaction web. Population Ecology, 52, 485-497.<\/li>\n\n\n\n<li>T. Miki*, S. Jacquet (2010) Indirect interactions in the microbial world: specificities and similarities to plant-insect systems. Population Ecology, 52, 475-483.<\/li>\n\n\n\n<li>S. Jacquet*, T. Miki, R. Noble, P. Pedduzi, and S. Wilhelm (2010) Viruses in aquatic ecosystems: important advancements of the last 20 years and prospects for the future in the field of microbial oceanography and limnology. Advances in Oceanography and Limnology, 1, 71-101.<\/li>\n\n\n\n<li>T. Nakazawa*, T. Miki, and T. Namba. Influence of predator-specific defense adaptation on intraguild predation. Oikos, 119, 418-427.<\/li>\n\n\n\n<li>C. Motegi, T.Nagata*, T. Miki, M.G. Weinbauer, L. Legendre, and F. Rassoulzadegan (2009) Viral control of bacterial growth efficiency in marine pelagic environments. Limnology and Oceanography, 54, 1901-1910.<\/li>\n\n\n\n<li>M. Ushio*, T. Miki, and K. Kitayama (2009) Phenolic control of plant nitrogen acquisition through the inhibition of soil microbial decomposition processes: a plant-microbe competition model. Microbes and Environments, 24, 180-187.<\/li>\n\n\n\n<li>T. Miki*, L. Giuggioli, Y. Kobayashi, T. Nagata, and S.A. Levin (2009) Vertically-structured prokaryotic community can control the efficiency of the biological pump in the oceans. Theoretical Ecology, 2, 199-216.<\/li>\n\n\n\n<li>T. Miki* (2009) A new graphical model for untangling complex relationships among environment, biodiversity, and ecosystem functioning. Ecological Research, 24, 937-941.<\/li>\n\n\n\n<li>A. Yamauchi*, and T. Miki (2009) Intraspecific niche flexibility facilitates species coexistence in a competitive community with a fluctuating environment. Oikos, 118, 55-66.<\/li>\n\n\n\n<li>T. Miki*, T. Yokokawa, T. Nagata, and N. Yamamura (2008) Immigration of prokaryotes to local environments enhances remineralization efficiency of sinking particles: a metacommunity model. Marine Ecology Progress Series, 366, 1-14.<\/li>\n\n\n\n<li>T. Miki, and S. Jacquet* (2008) Complex interactions in the microbial world: under-explored key links between viruses, bacteria and protozoan grazers in aquatic environments. Aquatic Microbial Ecology, 51, 195-208.<\/li>\n\n\n\n<li>T. Miki*, T. Nakazawa, T. Yokokawa and T. Nagata (2008) Functional consequences of viral impacts on bacterial communities: a food-web model analysis. Freshwater Biology, 53, 1142-1153.<\/li>\n\n\n\n<li>T. Miki*, M. Ueki, Z. Kawabata, and N. Yamamura (2007) Long-term dynamics of catabolic plasmids introduced to a microbial community in a polluted environment: mathematical model. FEMS Microbiology Ecology, 62, 211-221.<\/li>\n\n\n\n<li>G. Takimoto*, T. Miki, and M. Kagami (2007) Intraguild predation promotes complex alternative states along a productivity gradient. Theoretical Population Biology, 72, 264-273.<\/li>\n\n\n\n<li>M. Nakamura*, S. Utsumi, T. Miki and T. Ohgushi (2005) Flood initiates bottom-up cascades in a tri-trophic systems: host plant regrowth increases densities of a leaf beetle and its predators. Journal of Animal Ecology, 74, 683-691.<\/li>\n\n\n\n<li>T. Miki* and N. Yamamura (2005) Intraguild predation reduces bacterial richness and loosens the viral loop in aquatic systems: &#8216;kill the killer of the winner&#8217; hypothesis. Aquatic Microbial Ecology, 40, 1-12.<\/li>\n\n\n\n<li>T. Miki* and N. Yamamura (2005) Theoretical model for interactions between particle-associated and free-living bacteria to predict functional composition and succession in the bacterial communities. Aquatic Microbial Ecology, 39, 35-46.<\/li>\n\n\n\n<li>T. Miki* and N. Yamamura (2005) Effects of asynchronous fluctuations in DOC supply and bacterial growth on biodegradation efficiency. Ecological Modelling, 183, 281-299.<\/li>\n\n\n\n<li>T. Miki* and M. Kondoh (2002) Feedbacks between nutrient cycling and vegetation predict plant species coexistence and invasion. Ecology Letters, 5. 624-633.<\/li>\n<\/ul>\n\n\n\n<p>B. Books and Book Chapters<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Miki, T., 2012. Bacterial community should be considered in ecosystem model in the ocean? &#8211; Comparison between community-based model, black box model, and exponential decay model. In: M. Kawaguchi, K. Misaki, H. Sato, T. Yokokawa, T. Itai, T. M. Nguyen, J. Ono and S. Tanabe (Eds.). Interdisciplinary Studies on Environmental Chemistry Vol. 6: Advanced Environmental Studies by Young Scientists. Tokyo: Terrapub, 407-418.<\/li>\n\n\n\n<li>\u4e09\u6728 \u5065\uff0c2011\u3002 \u5fae\u751f\u7269\u306e\u96c6\u56e3\u751f\u7269\u5b66\u3002\u5927\u5712\u4eab\u53f8\u3001\u93e1\u5473\u9ebb\u8863\u5b50(\u4e3b\u7de8)\uff1a\u5fae\u751f\u7269\u306e\u751f\u614b\u5b66\uff0c\u6771\u4eac\uff1a\u5171\u7acb\u51fa\u7248\uff0c\u7b2c14\u7ae0\u3002<\/li>\n\n\n\n<li>\u4e09\u6728 \u5065\uff0c2008\u3002 \u7fa4\u96c6\u2015\u74b0\u5883\u9593\u306e\u30d5\u30a3\u30fc\u30c9\u30d0\u30c3\u30af\u2015\u751f\u7269\u591a\u69d8\u6027\u3068\u751f\u614b\u7cfb\u6a5f\u80fd\u306e\u3064\u306a\u304c\u308a\u3092\u518d\u8003\u3059\u308b\u3002\u5927\u4e32\u9686\u4e4b\u30fb\u8fd1\u85e4\u502b\u751f\u30fb\u4ef2\u5ca1\u96c5\u88d5 (\u4e3b\u7de8)\uff1a\u751f\u614b\u7cfb\u3068\u7fa4\u96c6\u3092\u3080\u3059\u3076\uff0c\u4eac\u90fd\uff1a\u4eac\u90fd\u5927\u5b66\u5b66\u8853\u51fa\u7248\u4f1a\uff0c\u7b2c5\u7ae0\u3002<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Research Achievements\/Publications\uff1a A. Journal Papers B. Books and Book Chapters<\/p>\n","protected":false},"author":13,"featured_media":26524,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"footnotes":""},"categories":[149],"tags":[152],"class_list":["post-30581","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-retired-faculty","tag-retired-faculty"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v25.3 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Takeshi Miki - Institute of Oceanography, NTU<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.oc.ntu.edu.tw\/en\/staffs-en\/retired-faculty\/30581\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Takeshi Miki - Institute of Oceanography, NTU\" \/>\n<meta property=\"og:description\" content=\"Research Achievements\/Publications\uff1a A. 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