{"id":28124,"date":"2011-11-02T11:52:00","date_gmt":"2011-11-02T03:52:00","guid":{"rendered":"https:\/\/www.oc.ntu.edu.tw\/%e6%9c%aa%e5%88%86%e9%a1%9e\/28124\/"},"modified":"2026-04-01T15:46:02","modified_gmt":"2026-04-01T07:46:02","slug":"%e9%99%b3%e9%9f%8b%e4%bb%81","status":"publish","type":"post","link":"https:\/\/www.oc.ntu.edu.tw\/en\/staffs-en\/faculty-members\/28124\/","title":{"rendered":"Wei-Jen Chen"},"content":{"rendered":"\n<h2 class=\"wp-block-heading\"><strong>Teaching<\/strong><\/h2>\n\n\n\n<p>Research Topic on Systematics and Conservation of Marine Animals, Evolutionary Biology and Population Genetics: Theory and Practice, Marine Fish Taxonomy and Practice Work, Vertebrate Zoology, Molecular Evolution: A Phylogenetic Approach<\/p>\n\n\n\n<h2 class=\"wp-block-heading\"><strong><strong>Publications<\/strong><\/strong><\/h2>\n\n\n\n<p>A. Journal Papers<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Wang, S. -Y., Lee, H., Russell, B. C., &amp; <strong>CHEN, W.-J.<\/strong> (2026) Beyond the sandy bottom: evolutionary and taxonomic insights into lizardfishes (Teleostei: Aulopiformes). PeerJ 14, e20735 (<a href=\"https:\/\/peerj.com\/articles\/20735\/\">link<\/a>).<\/li>\n\n\n\n<li>Campbell, M. A., Hale, M. C., Balachandran, N., <strong>CHEN, W.-J.<\/strong>, &amp; Becker, J. A. (2026) The influence of aquaculture translocations and escapees on the genetics of wild stocks of Lates calcarifer in Taiwan and Sri Lanka. <em>Conservation Genetics<\/em> 27(1), 23 (<a href=\"https:\/\/link.springer.com\/article\/10.1007\/s10592-025-01751-w?utm_source=getftr&amp;utm_medium=getftr&amp;utm_campaign=getftr_pilot&amp;getft_integrator=clarivate\">link<\/a>).<\/li>\n\n\n\n<li>Kanai, S., Menkara, Y., Nishioka, T., <strong>Chen, W.-J.<\/strong>, Motomura, H., &amp; Tea, Y. -K. (2025) Decodon erythroleukos, a new deepwater species of hypsigenyin wrasse (Teleostei: Labridae) from the western Pacific Ocean. <em>Journal of Fish Biology<\/em> DOI10.1111\/jfb.70262 (<a href=\"https:\/\/onlinelibrary.wiley.com\/doi\/epdf\/10.1111\/jfb.70262?getft_integrator=clarivate&amp;src=getftr&amp;utm_source=clarivate\">link<\/a>).<\/li>\n\n\n\n<li>Wang, Y. -C., Wang, D.R., Hanafi-Portier, M., Wei, C. -L., Denis, V., &amp; <strong>Chen, W.-J.<\/strong> (2025) Environmental DNA Metabarcoding Reveals Distinct Spatial and Seasonal Patterns in Offshore Fish Communities in Eastern and Western Taiwan. <em>Aquaculture, Fish and Fisheries<\/em> 5(6), e70144 (<a href=\"https:\/\/www.researchgate.net\/publication\/397498074_A_40-year_taxonomic_enigma_multigene_phylogeny_resolves_the_polyphyly_of_Plectranthias_Perciformes_Anthiadidae_and_supports_a_revised_taxonomy\">l<\/a><a href=\"https:\/\/onlinelibrary.wiley.com\/doi\/epdf\/10.1002\/aff2.70144?getft_integrator=clarivate&amp;src=getftr&amp;utm_source=clarivate\">ink<\/a>).<\/li>\n\n\n\n<li>Tang, C. -N., &amp; <strong>Chen, W.-J.<\/strong> (2025) A 40-year taxonomic enigma: multigene phylogeny resolves the polyphyly of Plectranthias (Perciformes: Anthiadidae) and supports a revised taxonomy. <em>Zoological Journal of The Linnean Society<\/em>, 205(3), zlaf148  (<a href=\"https:\/\/www.researchgate.net\/publication\/397498074_A_40-year_taxonomic_enigma_multigene_phylogeny_resolves_the_polyphyly_of_Plectranthias_Perciformes_Anthiadidae_and_supports_a_revised_taxonomy\">link<\/a>).<\/li>\n\n\n\n<li>Tongboonkua, P., Chanet, B., &amp; <strong>Chen, W.-J.<\/strong> (2025) Integrated Molecular and Morphological Analyses Resolve Long-Standing Classification Challenges in the Sinistral Flatfish Family Bothidae (Teleostei: Carangiformes). <em>Zoologica Scripta<\/em> DOI10.1111\/zsc.70020 (<a href=\"https:\/\/onlinelibrary.wiley.com\/doi\/10.1111\/zsc.70020\">link<\/a>).<\/li>\n\n\n\n<li>Corbari, L., Bouchet, P., Le Gall, L., Hourdez, S., Frutos, I., Gouillieux, B., Vassard, E., Moutardier, G., <strong>CHEN, W.-J.<\/strong>, Ng, S. -L., Bhagooli, R., Ramah, S., Kaullysing, D., Munbodhe, V., Labonte, C., Boone, R., &amp; Bender, S. (2025) New insights in benthic biodiversity of the saya de Malha Bank. <em>Deep-Sea Research Part II-Topical Studies in Oceanography<\/em> 222, 105500 (<a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0967064525000499\">link<\/a>).<\/li>\n\n\n\n<li>Ng, S. -L., White, W. T., Joung, S. -J., &amp; <strong>Chen, W.-J.<\/strong> (2025) Groundwork for conservation: an updated checklist of Chondrichthyes of Taiwan. <em>Biological Journal of The Linnean Society<\/em> 145(4), blaf051 (<a href=\"https:\/\/academic.oup.com\/biolinnean\/article-abstract\/145\/4\/blaf051\/8232820?redirectedFrom=fulltext&amp;login=true\">link)<\/a>.<\/li>\n\n\n\n<li>Hsu, L. L., Borsa, P., &amp; <strong>Chen, W.-J.<\/strong> (2025) Successive cycles of allopatric differentiation and secondary contact shape phylogeographical structure in an Indo-West Pacific reef fish. <em>Biological Journal of The Linnean Society<\/em> 144(2), blaf002 <a href=\"https:\/\/academic.oup.com\/biolinnean\/article-abstract\/144\/2\/blaf002\/7989510?redirectedFrom=fulltext\">(link)<\/a>.<\/li>\n\n\n\n<li>WONG, M.-K.,&nbsp;&amp;&nbsp;<strong>CHEN, W.-J.<\/strong>&nbsp;(2024) Exploring the phylogeny and depth evolution of cusk eels and their relatives (Ophidiiformes: Ophidioidei).&nbsp;<em>Molecular Phylogenetics and Evolution<\/em>&nbsp;199, 108164 (<a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S1055790324001568?dgcid=author\" target=\"_blank\" rel=\"noreferrer noopener\">link<\/a>).<\/li>\n\n\n\n<li><strong>CHEN, W.-J.<\/strong>, MIkI, R., NEVILL, J., &amp;&nbsp;BORSA, P. (2024)&nbsp;Gymnocranius indicus, a new large-eye seabream from the Indian Ocean. <em>Journal of the Marine Biological Association of the United Kingdom<\/em>&nbsp;104, e38, 1-10&nbsp;(<a href=\"https:\/\/www.cambridge.org\/core\/journals\/journal-of-the-marine-biological-association-of-the-united-kingdom\/article\/gymnocranius-indicus-a-new-largeeye-seabream-from-the-indian-ocean\/F0021521AD29A9B6FDAEB8C3EDE1EB30\">link<\/a>).<\/li>\n\n\n\n<li>CHEN, H.-P., LEE, M.-Y., &amp;&nbsp;<strong>CHEN, W.-J.<\/strong>&nbsp;(2024) Integrative taxonomy reveals unanticipated hidden diversity in the monotypic goosefish genus&nbsp;<em>Lophiomus<\/em>&nbsp;(Teleostei, Lophiidae), with description of three new species and resurrection of&nbsp;<em>Chirolophius laticeps<\/em>&nbsp;Ogilby, 1910.&nbsp;<em>European Journal of Taxonomy&nbsp;<\/em>943, 239\u2013287 (<a href=\"https:\/\/europeanjournaloftaxonomy.eu\/index.php\/ejt\/article\/view\/2599\" target=\"_blank\" rel=\"noreferrer noopener\">link<\/a>).<\/li>\n\n\n\n<li>Lee, H., Lee, K. S., Hsu, C. H., Lee, C. W., Li, C. E., Wang, J. K., Tseng, C. C., Chen, W. -J., Horng, C. C., Ford, C. T., Kroh, A., Bronstein, O., Tanaka, H., Oji, T., Lin, J. P., Janies, D. (2024) Embracing the taxonomic and topological stability of phylogenomics Reply. Scientific Reports, 14(1), 4094.<\/li>\n\n\n\n<li>Chanet, B., Schnell, N. K., Guintard, C., Chen, W. -J.* (2023) Anatomy of the endocrine pancreas in actinopterygian fishes and its phylogenetic implications. Scientific Reports, 13(1), 22501.<\/li>\n\n\n\n<li>Kong, M. S., Hung, C. H., Hsu, L. L., Yuan, H. W., Chen, W. -J.* (2023) Exploring genetic diversity and population structure of the Little Tern (Sternula albifrons) in Taiwan based on mtDNA and ddRAD sequencing data. Conservation Genetics, 25(2), 375-392.<\/li>\n\n\n\n<li>Lee, H., Lee, K. S., Hsu, C. H., Lee, C. W., Li, C. E., Wang, J. K., Tseng, C. C., Chen, W. -J., Horng, C. C., Ford, CT., Kroh, A., Bronstein, O., Tanaka, H., Oji, T., Lin, J. P., Janies, D. (2023) Phylogeny, ancestral ranges and reclassification of sand dollars. Scientific Reports, 13(1).<\/li>\n\n\n\n<li>Parey, E., Louis, A., Montfort, J., Bouchez, O., Roques, C., Iampietro, C., Lluch, J., Castinel, A., Donnadieu, C., Desvignes, T., Bucao, C. F., Jouanno, E., Wen, M., Mejri, S., Dirks, R., Jansen, H., Henkel, C., Chen, W. -J., Zahm, M., Cabau, C., Klopp, C., Thompson, A., Robinson-Rechavi, M., Braasch, I., Lecointre, G., Bobe, J., Postlethwait, J. H., Berthelot, C., Crollius, H. R., Guiguen, Y.(2023) Genome structures resolve the early diversification of teleost fishes. Science, 379(6632), 572-575.<\/li>\n\n\n\n<li>Hsu, T. H. T, Chen, W. -J., Denis, V. (2023) Navigating the scales of diversity in subtropical and coastal fish assemblages ascertained by eDNA and visual surveys. Ecological Indicators, 148, 110044.<\/li>\n\n\n\n<li>Chang, F. H., Lin, Y. C., Chiang, K. P., Nien, Y. H., Hsieh, C. H., Chen, W. -J., Hung, C. C., Kobari, T., Saito, H., Savidge, W. (2023) Editorial: Oceanographic processes linking nearshore, continental shelf, and shelf break. Frontiers in Marine Science, 10, 1137312.<\/li>\n\n\n\n<li>Tashiro, F., Chen, W. -J. (2022) Ilyophis singularis (Synaphobranchidae; Ilyophinae), a new deep-sea eel from the South China Sea. Ichthyological Research, 70(3), 332-336.<\/li>\n\n\n\n<li>Lin, Y. V., Hsiao, W. V., Chen, W. -J., Denis, V. (2022) Habitat change and its consequences on reef fish specialization in biogeographic transition zones. Journal of Biogeography, 49(8), 1549-1561.<\/li>\n\n\n\n<li>Lee, H., Puillandre, N., Kano, Y., Chen, W.-J., Samadi, S. (2022) Biodiversity and phylogeny of Cocculinidae (Gastropoda: Cocculinida) in the Indo-West Pacific. Zoological Journal Of The Linnean Society, 196(1), 366-392.<\/li>\n\n\n\n<li>Lim, H. C., Habib, A., Chen, W.-J.* (2021) Comparative Phylogeography and Phylogeny of Pennah Croakers (Teleostei: Sciaenidae) in Southeast Asian Waters. Genes, 12(12), 1926.<\/li>\n\n\n\n<li>Wong, M. K., Lee, M. Y, Chen, W.-J.* (2021) Integrative taxonomy reveals a rare and new tusk-eel species of Luciobrotula (Teleostei, Ophidiidae) from the Solomon Sea, West Pacific. European Journal of Taxonomy, 750, 52-69.<\/li>\n\n\n\n<li>Okamoto, M., Chen, W.-J., Motomura, H. (2020) New distributional records of three deepwater cardinalfishes Epigonus angustifrons, E. denticulatus, and E. exodon (Perciformes: Epigonidae) in the South Indian Ocean. Cybium, 44(2), 165-168.<\/li>\n\n\n\n<li>Chen, W.-J.*, Borsa, P. (2020) Diversity, phylogeny, and historical biogeography of large-eye seabreams (Teleostei: Lethrinidae). Molecular Phylogenetics and Evolution, 151, 106902.<\/li>\n\n\n\n<li>Hurzaid, A., Chan, T. Y., Nor, S. A. M., Muchlisin, Z. A., Chen, W.-J.* (2020) Molecular phylogeny and diversity of penaeid shrimps (Crustacea: Decapoda) from South-East Asian waters. Zoologica Scripta, 49(5), 596-613.<\/li>\n\n\n\n<li>Campbell, M. A., Tongboonkua, P., Chanet, B., Chen, W.-J. (2020) The distribution of the recessus orbitalis across flatfishes (order: Pleuronectiformes). Journal of Fish Biology, 97(1), 293-297.<\/li>\n\n\n\n<li>Ogino, A., Lee, S.-H., Chen, W.-J., Matsunuma, M. (2020) Chelidoperca cerasina sp. nov., a new perchlet (Perciformes: Serranidae) from the southwest Pacific Ocean. Ichthyological Research, 67(1), 117-132.<\/li>\n\n\n\n<li>Delrieu-Trottin, E., Durand, J. D., Limmon, G., Sukmono, T., Kadarusman, Sugeha, H. Y., Chen, W.-J., Busson, F., Borsa, P., Dahruddin, H., Sauri, S., Fitriana, Y., Zein, M. S. A., Hocd, R., Pouyaud, L., Keith, P., Wowor, D., Steinke, D., Hanner, R., Hubert, N. (2020) Biodiversity inventory of the grey mullets (Actinopterygii: Mugilidae) of the Indo-Australian Archipelago through the iterative use of DNA-based species delimitation and specimen assignment methods. Evolutionary Applications, 13(6), SI, 1451-1467.<\/li>\n\n\n\n<li>Chen, C.-J., Chen, W.-J., Shikina, S., Denis, V., Chang, C.-F. (2020) The plasticity of gonad development of sexual reproduction in a scleractinian coral, Porites lichen. General and Comparative Endocrinology, 285, 113270.<\/li>\n\n\n\n<li>Lee, H., Lin, J. P., Li, H. C., Chang, L. Y., Lee, K. S., Lee, S. J, Chen, W.-J., Sankar, A., &amp; Kang, S. C. (2019) Young colonization history of a widespread sand dollar (Echinodermata, Clypeasteroida) in western Taiwan. Quaternary International, 528, 120-129.<\/li>\n\n\n\n<li>Ogino, A., Lee, S.H, Chen, W.-J, &amp; Matsunuma, M. (2019) Chelidoperca cerasina sp. nov., a new perchlet (Perciformes: Serranidae) from the southwest Pacific Ocean. Ichthyological Research, DOI: 10.1007\/s10228-019-00714-9.<\/li>\n\n\n\n<li>Campbell, M.A., Chanet, B., Chen, J.N., Lee, M.Y., &amp; Chen, W.-J.* (2019) Origins and relationships of the Pleuronectoidei: Molecular and morphological analysis of living and fossil taxa. Zoologica Scripta, 48(5), 640-656.<\/li>\n\n\n\n<li>Lee, S.H., Lee, M.Y., Matsunuma, M., &amp; Chen, W.-J.* (2019) Exploring the Phylogeny and Species Diversity of Chelidoperca (Teleostei: Serranidae) From the Western Pacific Ocean by an Integrated Approach in Systematics, With Descriptions of Three New Species and a Redescription of C. lecromi Fourmanoir, 1982. Frontiers in Marine Science, 6, UNSP 465.<\/li>\n\n\n\n<li>Lee, H., Chen, W.-J.*, Puillandre, N., Aznar-Cormano, L., Tsai, M.H., &amp; Samadi, S. (2019) Incorporation of deep-sea and small-sized species provides new insights into gastropods phylogeny. Molecular Phylogenetics and Evolution, 135, 136-147.<\/li>\n\n\n\n<li>Fricke, R., Allen, G.R., Amon, D., Andrefouet, S., Chen, W.-J., Kinch, J., Mana, R., Russell, B.C., Tully, D., &amp; White, W.T. (2019) Checklist of the marine and estuarine fishes of New Ireland Province, Papua New Guinea, western Pacific Ocean, with 810 new records. ZOOTAXA, 4588(1), 1-+.<\/li>\n\n\n\n<li>Chen, J.-N., Samadi, S., &amp; Chen, W.-J.* (2018) Rhodopsin gene evolution in early teleost fishes. PLoS ONE, 13(11), e0206918.<\/li>\n\n\n\n<li>Bakar, A.A., Adamson, E.A.S., Juliana, L.H., Nor Mohd S.A., Chen, W.-J., Man, A., et al. (2018) DNA barcoding of Malaysian commercial snapper reveals an unrecognized species of the yellow-lined Lutjanus (Pisces:Lutjanidae). PLoS ONE, 13(9), e0202945.<\/li>\n\n\n\n<li>Okamoto, M., Chen, W.-J., &amp; Shinohara, G. (2018) Epigonus okamotoi (Perciformes: Epigonidae), a junior synonym of E. draco, with new distributional records for E. atherinoides and E. lifouensis in the West Pacific. Zootaxa, 4476 (1), 141\u2013150.<\/li>\n\n\n\n<li>Wang, S.-Y., Chen, J.-N., Russell, B.C., &amp; Chen, W.-J.* (2018) First record of Gauguin\u2019s blunt-nose lizardfish, Trachinocephalus gauguini Polanco, Acero &amp; Betancur 2016 (Teleostei: Synodontidae) outside the Marquesas Archipelago. Zootaxa, 4476 (1), 151\u2013156.<\/li>\n\n\n\n<li>Tongboonkua, T., Lee, M.-Y., &amp; Chen, W.-J.*, (2018) A new species of sinistral flatfish of the genus Chascanopsetta (Teleostei: Bothidae) from off Papua New Guinea, western Pacific Ocean. Zootaxa, 4476 (1), 168\u2013181.<\/li>\n\n\n\n<li>Lavou\u00e9, S., Ratmuangkhwang, S., Ho, H.-C., Chen, W.-J., Siti Azizah, M.N. (2018) Swimbladder evolution of longfin herrings (Pristigasteridae, Teleostei). Zoological Studies 57, 39.<\/li>\n\n\n\n<li>Chen, W.-J., Miki, R., and Borsa, P. (2017) Gymnocranius obesus, a new large-eye seabream from the Coral Triangle. Comptes Rendus Biologies, 340 (11-12), 520-530.<\/li>\n\n\n\n<li>Hung, K. W., Russell, B. C., and Chen, W.-J.* (2017) Molecular systematics of threadfin breams and relatives (Teleostei, Nemipteridae). Zoologica Scripta, 46 (5), 536-551.<\/li>\n\n\n\n<li>Lavoue, S.,Bertrand, J. A. M., Wang, H. Y., Chen, W.-J., Ho, H. C., Motomura, H., Hata, H., Sado, T., and Miya, M. (2017) Molecular systematics of the anchovy genus Encrasicholina in the Northwest Pacific. PLoS One, 12 (7), 0181329.<\/li>\n\n\n\n<li>Lavoue, S.,Bertrand, J. A. M., Chen, W.-J., Ho, H. C., Motomura, H., Sado, T., and Miya, M. (2017) Phylogenetic position of the rainbow sardine Dussumieria (Dussumieriidae) and its bearing on the early evolution of the Clupeoidei. Gene, 623, 41-47.<\/li>\n\n\n\n<li>Lo, P. C., Liu, S. H., Nor, S. A. M., and Chen, W.-J.* (2017) Molecular exploration of hidden diversity in the Indo-West Pacific sciaenid clade. PLoS ONE, 12 (4), e0176623.<\/li>\n\n\n\n<li>Bertrand, J. A. M., Borsa, P., and Chen, W.-J.* (2017) Phylogeography of the sergeants Abudefduf sexfasciatus and A-vaigiensis reveals complex introgression patterns between two widespread and sympatric Indo-West Pacific reef fishes. Molecular Ecology, 26 (9), 2527-2542.<\/li>\n\n\n\n<li>Fricke, R., Chen, J. N., and Chen, W.-J. (2017) New case of lateral asymmetry in fishes: A new subfamily, genus and species of deep water clingfishes from Papua New Guinea, western Pacific Ocean. Comptes Rendus Biologies, 340 (1), 47-62.<\/li>\n\n\n\n<li>Lee, H., Samadi, S., Puillandre, N., Tsai, M. H., Dai, C. F., and Chen, W.-J. (2016) Eight new mitogenomes for exploring the phylogeny and classification of Vetigastropoda. Journal of Molluscan Studies, 82, 534-541.<\/li>\n\n\n\n<li>Borsa, P., Durand, J. D., Chen, W.-J., Hubert, N., Muths, D., Mou-Tham, G., and Kulbicki, M. (2016) Comparative phylogeography of the western Indian Ocean reef fauna. Acta Oecologica-International Journal of Ecology, 72, 72-86.<\/li>\n\n\n\n<li>Chen, C.-J., Shikina, S., Chen, W.-J., Chung, Y.-J., Chiu, Y.-L., Bertrand, J.A.M., Lee, Y.-H., and Chang, C.-F. (2016) A novel female-specific and sexual reproduction-associated Dmrt gene discovered in the stony coral, Euphyllia ancora. Biology of Reproduction, 94 (2), Article Number 40.<\/li>\n\n\n\n<li>Chen, W.-J.*, Ho, H. C., and Borsa, P. (2016) Taiwanese Records of Oblong Large-Eye Seabream Gymnocranius oblongus (Teleostei: Lethrinidae) and Other Rare or Undetermined Large-Eye Seabreams. Frontiers in Marine Science, 3, 107.<\/li>\n\n\n\n<li>Samadi, S., Puillandre, N., Pante, E., Boisselier, M. C., Corbari, L., Chen, W.-J., Maestrati, P., Mana, R., Thubaut, J., Zuccon, D. and Hourdez, S. (2015) Patchiness of deep-sea communities in Papua New Guinea and potential susceptibility to anthropogenic disturbances illustrated by seep organisms, Marine Ecology-An Evolutionary Perspective, 36, 109-132.<\/li>\n\n\n\n<li>Lo, P. C., Liu, S. H., Chao, N. L., Nunoo, F. K. E., Mok, H. K., Chen, and W. J.* (2015) A multi-gene dataset reveals a tropical New World origin and Early Miocene diversification of croakers (Perciformes: Sciaenidae). Molecular Phylogenetics and Evolution, 88, 132-143.<\/li>\n\n\n\n<li>Borsa, P., Sembiring, A., Fauvelot, C., and Chen, W. J. (2014) Resurrection of Indian Ocean humbug damselfish,&nbsp;<em>Dascyllus abudafur<\/em>&nbsp;(Forsskal) from synonymy with its Pacific Ocean sibling,&nbsp;<em>Dascyllus aruanus<\/em>&nbsp;(L.). Comptes Rendus Biologies, 337(12), 709-716.<\/li>\n\n\n\n<li>Liu, S.-Y.V., Chang, F.-T., Borsa, P., Chen, W.-J., and Dai, C.-F.* (2014) Phylogeography of the humbug damselfish,&nbsp;<em>Dascyllus aruanus<\/em>&nbsp;(Linnaeus, 1758): evidence of Indo-Pacific vicariance and genetic differentiation of peripheral populations. Biological Journal of the Linnean Society, 113, 931\u2013942.<\/li>\n\n\n\n<li>Chang, C.-H., Li. F. Shao, K.-T., Lin, Y.-S., Morosawa, T. Kim, S., Koo, H. Kim, W., Lee, J.-S., He, S., Smith, C., Reichard, M., Miya, M., Sado, T., Uehara, K., Lavou\u00e9, S., Chen, W.-J.*and Mayden, R.L. (2014) Phylogenetic relationships of Acheilognathidae (Cypriniformes: Cyprinoidea) as revealed from evidence of both nuclear and mitochondrial gene sequence variation: Evidence for necessary taxonomic revision in the family and the identification of cryptic species. Molecular Phylogenetics and Evolution, 81, 182-194.<\/li>\n\n\n\n<li>Chen, W.-J.*, Santini, F., Carnevale, G., Chen, J.-N., Liu, S.-H., Lavoue, S. and Mayden, R.L. (2014) New insights on early evolution of spiny-rayed fishes (Teleostei: Acanthomorpha). Frontiers in Marine Science 1, 53 (Open Access).<\/li>\n\n\n\n<li>Campbell, M. A., Lopez, J. A., Satoh, T. P. , Chen, W. -J*., and Miya, M. (2014) Mitochondrial genomic investigation of flatfish monophyly, Gene, 551(2), 176-182.<\/li>\n\n\n\n<li>Chen, W. -J.*, Lavoue, S., Beheregaray, L. B., and Mayden, R. (2014) Historical biogeography of a new antitropical clade of temperate freshwater fishes, Journal of Biogeography, 41(9), 1806-1818.<\/li>\n\n\n\n<li>Fricke, R., Allen, G. R., Andrefouet, S., Chen, W. -J., Hamel, M. A. , Laboute, P., Mana, R. , Hui, T. H. , and Uyeno, D. (2014) Checklist of the marine and estuarine fishes of Madang District, Papua New Guinea, western Pacific Ocean, with 820 new records, Zootaxa, 3832(1), 1-247.<\/li>\n\n\n\n<li>1Campbell, M. A., Chen, W. -J.*, Lopez, J. A. (2014) Molecular data do not provide unambiguous support for the monophyly of flatfishes (Pleuronectiformes): A reply to Betancur-R and Orti, Molecular Phylogenetics and Evolution, 75, 149-153.<\/li>\n\n\n\n<li>Chen, J. N., Lopez, J. A., Layoue, S., Miya, M., and Chen, W. -J.* (2014) Phylogeny of the Elopomorpha (Teleostei): Evidence from six nuclear and mitochondrial markers, Molecular Phylogenetics and Evolution, 70, 152-161.<\/li>\n\n\n\n<li>Borsa, P., Hsiao, D. R., Carpenter, K. E., and Chen, W. -J. (2013) Cranial morphometrics and mitochondrial DNA sequences distinguish cryptic species of the longface emperor (Lethrinus olivaceus), an emblematic fish of Indo-West Pacific coral reefs, Comptes Rendus Biologies, 336(10), 505-514.<\/li>\n\n\n\n<li>Campbell, M.A., Chen, W.-J., and Lopez, J.A. (2013) Are flatfishes (Pleuronectiformes) monophyletic? Molecular Phylogenetics and Evolution, 69 (3), 664-673.<\/li>\n\n\n\n<li>Chen, W.-J., Lavoue, S., and Mayden, R.L. (2013) Evolutionary origin and early biogeography of otophysan fishes (Ostariophysi: Teleostei). Evolution, 67, 2218-2239.<\/li>\n\n\n\n<li>Borsa, P., Arlyza, I.S., Chen, W.-J., Durand, J.D., Meekan, M.G., and Shen, K.N. (2013) Resurrection of New Caledonian maskray Neotrygon trigonoides (Myliobatoidei: Dasyatidae) from synonymy with N. kuhlii, based on cytochrome-oxidase I gene sequences and spotting patterns, Comptes Rendus Biologies, 336(4), 221-232.<\/li>\n\n\n\n<li>Borsa, P., Bearez, P., Paijo, S., and Chen, W. -J. (2013) Gymnocranius superciliosus and Gymnocranius satoi, two new large-eye breams (Sparoidea: Lethrinidae) from the Coral Sea and adjacent regions, Comptes Rendus Biologies, 336(4), 233-240.<\/li>\n\n\n\n<li>Ho, H.C. and Chen, W.-J. (2013) DNA sequences and morphological variation in&nbsp;<em>Lophiodes iwamotoi<\/em>&nbsp;Ho, Seret and Shao, 2011 based on new material from New Caledonia, ZOOTAXA, 3682(4), 594-598.<\/li>\n\n\n\n<li>Lavoue, S., Miya, M., Musikasinthorn, P., Chen, W. -J., and Nishida, M. (2013) Mitogenomic Evidence for an Indo-West Pacific Origin of the Clupeoidei (Teleostei: Clupeiformes), PLoS One, 8(2), e56485.<\/li>\n\n\n\n<li>Chen, W. -J. and Mayden, R. L. (2012) Phylogeny of suckers (Teleostei: Cypriniformes: Catostomidae): further evidence of relationships provided by the single-copy nuclear gene IRBP2, Zootaxa, 3586 (SI), 195-210.<\/li>\n\n\n\n<li>Durand, J. D., Chen, W. -J., Shen, K. N., Fu, C. Z., and Borsa, P. (2012) Genus-level taxonomic changes implied by the mitochondrial phylogeny of grey mullets (Teleostei: Mugilidae), Comptes Rendus Biologies, 335 (10-11), 687-697.<\/li>\n\n\n\n<li>Yang L., Arunachalam M., Sado T., Levin B.A., Golubtsov A.S., Freyhof J., Friel J.P., Chen W.-J., Hirt, M.V., Manickam R., Agnew M.K., Simons A.M., Saitoh K., Miya M., Mayden R.L., and He S.P. (2012) Molecular phylogeny of the cyprinid tribe Labeonini (Teleostei: Cypriniformes). Molecular Phylogenetics and Evolution, 65(2): 362-379.<\/li>\n\n\n\n<li>Durand, J. D., Shen, K. N., Chen, W.-J., Jamandre, B. W., Blel, H., Diop, K., Nirchio, M., Garcia de Leon, F. J., Whitfield, A. K., Chang, C. W. and Borsa, P. (2012) Systematics of the grey mullets (Teleostei: Mugiliformes: Mugilidae): Molecular phylogenetic evidence challenges two centuries of morphology-based taxonomy, Molecular Phylogenetics and Evolution, 64(1), 73-92.<\/li>\n\n\n\n<li>Tang, K. L., Agnew, M. K., Chen, W.-J., Hirt, M. V., Raley, M. E., Sado, T., Schneider, L. M., Yang, L., Bart, H. L., He, S. P., Liu, H. Z., Miya, M., Saitoh, K., Simons, A. M., Wood, R. M. and Mayden, R. L. (2011) Phylogeny of the gudgeons (Teleostei: Cyprinidae: Gobioninae), Molecular Phylogenetics and Evolution, 61(1), 103-124.<\/li>\n\n\n\n<li>Corio-Costet, M.-F., Dufour, M. C., Cigna, J., Abadie, P. and Chen, W.-J. (2011) Diversity and fitness of Plasmopara viticola isolates resistant to QoI fungicides. European Journal of Plant Pathology, 129, 315-329.<\/li>\n\n\n\n<li>Saitoh, K., Chen, W.-J. and Mayden, R. L. (2010) Extensive hybridization and tetrapolyploidy in spined loach fish. Molecular Phylogenetics and Evolution, 56, 1001-1010.<\/li>\n\n\n\n<li>Mayden, R. L. and Chen, W.-J. (2010) The world&#8217;s smallest vertebrate species of the Genus Paedocypris: A new family of freshwater fishes and the sister group to the world&#8217;s most diverse clade of freshwater fishes (Teleostei: Cypriniformes). Molecular Phylogenetics and Evolution, 57, 152-175.<\/li>\n\n\n\n<li>Chen, W.-J. and Mayden, R. L. (2010) A phylogenomic perspective on the new era of ichthyology. BioScience, 60, 421-432.<\/li>\n\n\n\n<li>Borsa, P., Collet, A., Carassou, L., Ponton, D. and Chen, W.-J. (2010) Multiple nuclear and mitochondrial genotyping identifies emperors and large-eye breams (Teleostei: Lethrinidae) from New Caledonia and reveals new large-eye bream species. Biochemical Systematics and Ecology, 38, 370-389.<\/li>\n\n\n\n<li>Borsa, P., B\u00e9arez, P. and Chen, W.-J. (2010) Gymnocranius oblongus, a new large-eye bream species from New Caledonia (Teleostei: Lethrinidae). Comptes Rendus Biologies, 333, 241-247.<\/li>\n\n\n\n<li>Mayden, R. L., Chen, W.-J., Bart, H. L., Doosey, M. H., Simons, A. M., Tang, K. L., Wood, R. M., Agnew, M. K., Yang, L., Hirt, M. V., Clements, M. D., Saitoh, K., Sado, T., Miya, M. and Nishida, M. (2009) Reconstructing the phylogenetic relationships of the Earth&#8217;s most diverse clade of freshwater fishes &#8211; Order Cypriniformes (Actinopterygii: Ostariophysi): a case study using multiple nuclear loci and the mitochondrial genome. Molecular Phylogenetics and Evolution, 51, 500-514.<\/li>\n\n\n\n<li>Chen, W.-J. and Mayden, R. L. (2009) Molecular systematics of the Cyprinoidea (Teleostei: Cypriniformes), the world&#8217;s largest clade of freshwater fishes: Further evidence from six nuclear genes. Molecular Phylogenetics and Evolution, 52, 544-549.<\/li>\n\n\n\n<li>Chen, W.-J., Lheknim, V. and Mayden, R. L. (2009) Molecular phylogeny of the Cobitoidea (Teleostei: Cypriniformes) revisited: position of enigmatic loach Ellopostoma Vaillant resolved with six nuclear genes. Journal of Fish Biology, 75, 2197-2208.<\/li>\n\n\n\n<li>Saitoh, K. and Chen, W.-J. (2008) Reducing cloning artifacts for recovery of allelic sequences by T7 endonuclease I cleavage and single re-extension of PCR products &#8211; a benchmark. Gene, 423, 92-95.<\/li>\n\n\n\n<li>Mayden, R. L., Tang, K. L., Wood, R. M., Chen, W.-J., Agnew, M. K., Conway, K. W., Yang, L., Simons, A. M., Bart, H. L., Harris, P. M., Li, J., Wang, X., Saitoh, K., He, S., Liu, H., Chen, Y., Nishida, M. and Miya, M. (2008) Inferring the Tree of Life of the order Cypriniformes, the earth&#8217;s most diverse clade of freshwater fishes: implications of varied taxon and character sampling. Journal of Systematics and Evolution, 46, 424-438.<\/li>\n\n\n\n<li>He, S., Mayden, R. L., Wang, X., Wang, W., Tang, K. L., Chen, W.-J. and Chen, Y. (2008). Molecular phylogenetics of the family Cyprinidae (Actinopterygii: Cypriniformes) as evidenced by sequence variation in the first intron of S7 ribosomal protein-coding gene: further evidence from a nuclear gene of the systematic chaos in the family. Molecular Phylogenetics and Evolution, 46, 818-829.<\/li>\n\n\n\n<li>He, S., Gu, X., Mayden, R. L., Chen, W.-J., Conway, K. W. and Chen, Y. (2008b). Phylogenetic position of the enigmatic genus Psilorhynchus (Ostariophysi: Cypriniformes): evidence from the mitochondrial genome. Molecular Phylogenetics and Evolution, 47, 419-425.<\/li>\n\n\n\n<li>Conway, K. W., Chen, W.-J. and Mayden, R. L. (2008) The \u201cCelestial Pearl danio\u201d is a miniature Danio (s.s) (Ostariophysi: Cyprinidae): evidence from morphology and molecules. Zootaxa, 1686, 1-28.<\/li>\n\n\n\n<li>Chen, W.-J., Miya, M., Saitoh, K. and Mayden, R. L. (2008) Phylogenetic utility of two existing and four novel nuclear gene loci in reconstructing Tree of Life of ray-finned fishes: the order Cypriniformes (Ostariophysi) as a case study. Gene, 423, 125-134.<\/li>\n\n\n\n<li>Chen, W.-J., Ruiz-Carus, R. and Ort\u00ed, G. (2007) Relationships among four genera of mojarras (Teleostei: Perciformes: Gerreidae) from the western Atlantic and their tentative placement among percomorph fishes. Journal of Fish Biology, 70 (sb), 202-218.<\/li>\n\n\n\n<li>Chen, W.-J., Delmotte, F., Richard-Cervera, S., Douence, L., Greif, C. and Corio-Costet, M. F. (2007) At least two origins of fungicide resistance in grapevine downy mildew populations. Applied and Environmental Microbiology, 73, 5162-5172.<\/li>\n\n\n\n<li>Delmotte, F., Chen, W.-J., Richard-Cervera, S., Greif, C., Papura, D., Giresse, X., Mondor-Genson, G. and Corio-Costet, M. F. (2006) Microsatellite DNA markers for Plasmopara viticola, the causal agent of downy mildew of grapes. Molecular Ecology Notes, 6, 379-381.<\/li>\n\n\n\n<li>Luo, J., Yang, D., Suzuki, H., Wang, Y., Chen, W.-J., Campbell, K. L. and Zhang, Y. P. (2004) Molecular phylogeny and biogeography of Oriental voles: genus Eothenomys (Muridae, Mammalia). Mol Phylogenet Evol, 33, 349-362.<\/li>\n\n\n\n<li>L\u00f3pez, J. A., Chen, W.-J. and Ort\u00ed, G. (2004) Esociform phylogeny. Copeia, 2004, 449-464.<\/li>\n\n\n\n<li>Chen, W.-J., Ort\u00ed, G. and Meyer, A. (2004) Novel evolutionary relationship among four fish model systems. Trends in Genetics, 20, 424-431.<\/li>\n\n\n\n<li>Chen, W.-J., Bonillo, C. and Lecointre, G. (2003) Repeatability of clades as criterion of reliability: a case study for molecular phylogeny of Acanthomorpha (Teleostei) with larger number of taxa. Molecular Phylogenetics and Evolution 26, 262-288.<\/li>\n\n\n\n<li>Derome, N., Chen, W.-J., Dettai, A., Bonillo, C. and Lecointre, G. (2002) Phylogeny of Antarctic dragonfishes (Bathydraconidae, Notothenioidei, Teleostei) and related families based on their anatomy and two mitochondrial genes. Molecular Phylogenetics and Evolution 24, 139-152.<\/li>\n<\/ul>\n\n\n\n<p>B. Book Chapters<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Chen, J.-N.,Samadi, S., and Chen, W.-J.* (2015) Elopomorpha (teleostei) as a new model fish group for evolutionary biology and comparative genomics. In: P. Pontarotti, ed., Evolutionary Biology: Biodiversification from Genotype to Phenotype, pp.329. Springer.<\/li>\n\n\n\n<li>Lavou\u00e9 S.*, Konstantinidis P., and Chen W.-J. (2014) Progress in Clupeiform Systematics. In: K. Ganias, ed., Biology and Ecology of Anchovies and Sardines. Science Publishers, Enfield, New Hampshire, pp. 1-42.<\/li>\n\n\n\n<li>Corio-Costet, M.-F., Martinez, F., Delmotte, F., Douence, L., Richart-Cervera, S. and Chen, W.-J. (2008) Resistance of Plasmopara viticola to QoIs fungicides: Origin and Diversity. In Modern fungicides and antifungal compounds V. (Dehne, H. W., Deising, H. B., Gisi, U., Kuck, K. H., Russell, P. E. and Lyr, H., eds.), pp. 107-112. Braunschweig, Germany: DPG.<\/li>\n\n\n\n<li>Chen, W.-J., Bonillo, C. and Lecointre, G. (1998) Phylogeny of the Channichthyidae (Notothenioidei, Teleostei) based on two mitochondrial genes. In Fishes of Antarctica: A biological overview. (di Prisco, G., Pisano, E. and Clarke, A., eds.), pp. 187-198. Milano, Italy: Springer-Verlag.<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Teaching Research Topic on Systematics and Conservation of Marine Animals, Evolutionary Biology and Population Genetics: Theory and Practice, Marine Fish Taxonomy and Practice Work, Vertebrate Zoology, Molecular Evolution: A Phylogenetic Approach Publications A. Journal Papers B. Book Chapters<\/p>\n","protected":false},"author":10,"featured_media":26525,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"footnotes":""},"categories":[107,111,115],"tags":[128],"class_list":["post-28124","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-staffs-en","category-faculty-members","category-biol_fish-en","tag-biol_fish-en"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v25.3 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Wei-Jen Chen - Institute of Oceanography, NTU<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.oc.ntu.edu.tw\/en\/staffs-en\/faculty-members\/28124\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Wei-Jen Chen - Institute of Oceanography, NTU\" \/>\n<meta property=\"og:description\" content=\"Teaching Research Topic on Systematics and Conservation of Marine Animals, Evolutionary Biology and Population Genetics: Theory and Practice, Marine Fish Taxonomy and Practice Work, Vertebrate Zoology, Molecular Evolution: A Phylogenetic Approach Publications A. 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