• 陳昭倫

    教授

  • 電話1:(02) 2789-9549
  • 電話2:
  • 傳真:(02) 2785-8059
  • 電子郵件1:cac@gate.sinica.edu.tw
  • 電子郵件2:
  • 網站:
  • 研究室:中央研究院生物多樣性研究中心
  • 專長領域:海洋分子生態與演化、海洋生物地理、海洋生態學、海洋保育生物學
  • 學經歷:
    • 1988年 中山大學海洋資源系學士
    • 1990年 中山大學海洋生物研究所碩士
    • 1995年 澳洲James Cook University 海洋生物學系博士
    • 1996-1997 國立海洋生物博物館博士後研究
    • 1997-2003 中央研究院動物研究所助研究員
    • 2004- 中央研究院動物研究所副研究員
    • 2001-2007 台灣大學海洋所合聘助理教授
    • 2007- 台灣大學海洋所合聘副教授
    • 2011-台灣大學海洋所合聘教授
  • 研究成果與著作:
    • S. Y. Yang, W. L. Fong, W. S. Chow, C. M. Hsu, C. L. C. Chan, S. Keshavmurthy, and C. A. Chen* (2018) Development of Novel Polymorphic Microsatellite Markers in Catch Bowl Coral, Isopora palifera (Scleractinia; Acroporidae) Using Next-generation Sequencing. Zoological Studies, 57, 10.6620/ZS.2018.57-32.
    • S. T. M. Lee, S. Keshavmurthy*, S. Fontana, M. Takuma, W.-H. Chou and C. A. Chen* (2018) Transcriptomic response in Acropora muricata under acute temperature stress follows preconditioned seasonal temperature fluctuations. BMC Research Notes, 11, 119.
    • K.S. Luzon*, M.-F. Lin, M.C.A.A. Lagman, W.R.Y. Licuanan, C. A. Chen (2017) Resurrecting a subgenus to genus: molecular phylogeny of Euphyllia and Fimbriaphyllia (order Scleractinia; family Euphyllidae; clade V). PeerJ, 5, e4074.
    • J.-H. Shiu, S. Keshavmurthy, P.-W. Chiang, H.-J. Chen, S.-P. Lou, C.-H. Tseng, H. J. Hsieh, C. A. Chen & S.-L. Tang* (2017) Dynamics of coral-associated bacterial communities acclimated to temperature stress based on recent thermal history. Scientific Reports, 7(1), 14933.
    • J.-T. Wang *, S. Keshavrnurthy, T.-Y. Chu, C. A. Chen (2017) Diverse responses of Symbiodinium types to menthol and DCMU treatment. PeerJ, 5 10.7717/peerj.3843.
    • C.-Y. Liou, S.-Y. Yang*, and C. A. Chen* (2017) Unprecedented calcareous algal reefs in northern Taiwan merit high conservation priority. Coral Reefs, 36(4), 1253.
    • V. Denis *, L . Ribas-Deulofeu, N. Sturaro, C.-Y. Kuo, C. A. Chen (2017) A functional approach to the structural complexity of coral assemblages based on colony morphological features. Scientific Reports 7(1), 9849.
    • S.-H. Yang, C.-H. Tseng, C.-R. Huang, C.-P. Chen, K. Tandon, S. T. M. Lee, P.-W. Chiang, J.-H. Shiu, C. A. Chen and S.-L. Tang (2017) Long-Term Survey Is Necessary to Reveal Various Shifts of Microbial Composition in Corals. Frontiers in Microbiology, 8, 1094.
    • J. D. Reimer*, M. E. A. Santos, H. Kise, M. L. Neo, C. A. Chen, K. Soong (2017) Diversity of Zoantharia (Anthozoa: Hexacorallia) at Dongsha Atoll in the South China Sea. Regional Studies in Marine Science, 12, 49-57.
    • Y.-Y. Chuang, M. Kitahara, H. Fukami, D. Tracey, D. J. Miller, C. A. Chen* (2017) Loss and Gain of Group I Introns in the Mitochondrial Cox1 Gene of the Scleractinia (Cnidaria; Anthozoa). Zoological Studies, 56, 10.6620/ZS.2017.56-09.
    • M.-J. Ho, C.-M. Hsu, C. A. Chen* (2017) Wall of orange cup coral, Tubastraea coccinea, at the inlet breakwaters of a nuclear power plant, southern Taiwan. Marine Biodiversity, 47 (1), 163-164.
    • S. Keshavmurthy*, K.-H. Tang, C.-M. Hsu, C.-H. Gan, C.-Y. Kuo, K. Soong, H.N. Chou, C. A. Chen* (2017) Symbiodinium spp. associated with scleractinian corals from Dongsha Atoll (Pratas), Taiwan, in the South China Sea. PeerJ, 5, e2871.
    • M.-F. Lin, A. Moya, H. Ying, C. A. Chen, I. Cooke, E.E. Ball, S. Foret, D.J . Miller (2017) Analyses of Corallimorpharian Transcriptomes Provide New Perspectives on the Evolution of Calcification in the Scleractinia (Corals). Genome Biology and Evolution, 9(1), 150-160.
    • R. Arrigoni, M. L. Berumen, C. A. Chen, T. I. Terraneo, A. H. Baird, C. Payri, F. Benzoni (2016) Species delimitation in the reef coral genera Echinophyllia and Oxypora (Scleractinia, Lobophylliidae) with a description of two new species. Molecular Phylogenetics and Evolution, 105 146-159.
    • M. F, Lin, W. H. Chou, M. V Kitahara, C. A. Chen, D. J. Miller, S. Foret (2016) Corallimorpharians are not “naked corals”: insights into relationships between Scleractinia and Corallimorpharia from phylogenomic analyses. PeerJ Preprints, 4, e2151v1.
    • Y. Y. Chuang, C. A. Chen* (2016) The complete mitochondrial genomes of Pseudosiderastrea spp (Cnidaria, Scleractinia, Siderastreidae). Mitochondrial DNA Part A, 27 (6), 4065-4066.
    • R. Arrigoni, F. Benzoni, D. W. Huang, H. Fukami, C. A. Chen, M. L. Berumen, M. Hoogenboom, D. P. Thomson, B. W. Hoeksema, A. F. Budd, Y. Zayasu, T. I. Terraneo, Y. F. Kitano, A. H. Baird (2016) When forms meet genes: revision of the scleractinian genera Micromussa and Homophyllia (Lobophylliidae) with a description of two new species and one new genus. Contributions to Zoology, 85 (4), 387-422.
    • S.-T. Hsiao, S. C. Chuang, K. S. Chen, P. H. Ho, C. L. Wu, C. A. Chen* (2016) DNA barcoding reveals that the common cupped oyster in Taiwan is the Portuguese oyster Crassostrea angulata (Ostreoida, Ostreidae), not C. gigas. Scientific Reports, 6 10.1038/srep34057.
    • H. J. Hsieh, C. K-C. Wen, Y.-C. Huang, K.-S. Chen, C.-F. Dai, C. A. Chen* (2016) Spatial patterns and environmental settings of non-reefal coral communities across the Tropics of Cancer in the Penghu Archipelago (Pescadores), Taiwan. Zoological Studies, doi:10.6620/ZS.2016.55-45.
    • L. R. Deulofeu, V. Denis*, S. De Palmas, C.-Y. Kuo, H. J. Hsieh, C. A. Chen* (2016) Structure of Benthic Communities along the Taiwan Latitudinal Gradient, PLoS ONE, 11(8), e0160601.
    • G. Suzuki, S. Keshavmurthy, T. Hayashibara, C. C. Wallace, Y. Shirayama, C. A. Chen, H. Fukami (2016) Genetic evidence of peripheral isolation and low diversity in marginal populations of the Acropora hyacinthus complex. Coral Reefs, DOI: 10.1007/s00338-016-1484-2.
    • W.-M. Chen, L.-P. Liu, C. A. Chen, J.-T. Wang, S.-Y. Sheu (2016) Thalassotalea montiporae sp. nov., isolated from the encrusting pore coral Montipora aequituberculata. International Journal of Systematic and Evolutionary Microbiology, doi: 10.1099/ijsem.0.001313.
    • D.-W. Huang, B. W. Hoeksema, Y. A. Affendi, P. O. Ang, C. A. Chen, H. Huang, D. J. W. Lane, W. Y. Licuanan, O. Vibol, S. T. Vo, T. Yeemin, L. M. Chou (2016) Conservation of reef corals in the South China Sea based on species and evolutionary diversity. Biodiversity and Conservation, 25(2), 331-344.
    • C. Vieira, K. Shashank, S.-J. Ju, K. Hyeong, I. Seo, C.-K. Kang, H.-K. Hong, C. A. Chen, K.-S. Choi* (2016) Population dynamics of a high-latitude coral Alveopora japonica Eguchi from Jeju Island, off the southern coast of Korea. Marine and Fresh Water Research,67(5), 594-604.
    • V. Denis, De Palmas, S.,Benzoni, F., C. A. Chen * (2015) Extension of the known distribution and depth range of the scleractinian coral Psammocorastellata: first record from a Taiwanese mesophotic reef. Marine Biodiversity, 45(4), 619-620.
    • J.-T. Wang*, C.-M. Hsu, C.-Y. Kuo, P.-J. Meng, C. A. Chen*(2015) Physiological Outperformance at the Morphologically-Transformed Edge of the CyanobacteriospongeTerpioshoshinota (Suberitidae: Hadromerida) when Confronting Opponent Corals. PLoS One, 10(6), e0131509.
    • S.-Y. V. Liu, C.-L. C. Chan, H. J. Hsieh, S. Fontana, C. C. Wallace, C. A. Chen* (2015) Massively parallel sequencing (MPS) assays for sequencing mitochondrial genomes: the phylogenomic implications for Acropora staghorn corals (Scleractinia, Acroporidae). Marine Biology, 162(6), 1383-1392.
    • F.-W. Kuo, C.-Y. Kuo, T.-Y. Fan, M.-C. Liu, C. A. Chen* (2015) Hidden ecosystem function of rabbitfishes? Siganusfuscescens feeds on the soft coral, Sarcophyton sp.. Coral Reefs, 34(1), 57.
    • P.-A. Château, Y.-C. A. Huang, C. A. Chen, Y.-C. Chang* (2015) Integrated assessment of sustainable marine cage culture through system dynamics modeling, Ecological Modelling, 299, 140-146.
    • S. de Palmas, V. Denis, L. RibasDeulofeu, M. Loubeyres, S. Woo, S. J. Hwang, J. I. Song, C. A. Chen*(2015) Symbiodinium spp. associated with high-latitude scleractinian corals from Jeju Island, South Korea. Coral Reefs, 34(3), 919-925.
    • Y.-Y. Chuang, C. A. Chen*(2015) The complete mitochondrial genomes of Pseudosiderastreaspp (Cnidaria,Scleractinia, Siderastreidae), Mitochondrial DNA, DOI: 10.3109/19401736.2014.1003845.
    • D. Huang, W. Y. Licuanan, B. W. Hoeksema, C. A. Chen, P. O. Ang, H. Huang, D. J. W. Lane, S. T. Vo, Z. Waheed, A. Yang Amri, T. Yeemin, L. M. Chou (2015) Extraordinary diversity of reef corals in the South China Sea. Marine Biodiversity, 45(2), 157-168.
    • S. Montano, W.-H. Chou, C. A. Chen, P Galli, J. D. Reimer (2014) First record of the coral-killing sponge Terpioshoshinota in the Maldives and Indian Ocean ,Bulletin of Marine Science, 91(1), 97-98.
    • C.-M. Hsu, S. de Palmas, C.-Y. Kuo, V. Denis, C. A. Chen* (2014) Identification of scleractinian coral recruits using fluorescent census and DNA barcoding techniques, Plos ONE, 9(9), e107366.
    • V. Denis, L. Ribas-Deulofeu, M. Loubeyres, S. De Palmas, S.-J. Hwang, S. Woo, J.-I. Song, C. A. Chen* (2014) Recruitment of the subtropical coral Alveopora japonica in the temperate waters of Jeju Island, South Korea, Bulletin of Marine Science, 91(1), 85-96.
    • R. Arrigoni, Z. T. Richards, C. A. Chen, A. H. Baird, F. Benzoni (2014) Taxonomy and phylogenetic relationships of the coral genera Australomussa and Parascolymia (Scleractinia, Lobophylliidae), Contributions to Zoology, 83(3), 195-215.
    • S. Keshavmurthy, S. Fontana, T. Mezaki, L. del Caño González, C. A. Chen* (2014) Doors are closing on early development in corals facing climate change, Scientific Reports, 4, 5633.
    • V. Denis, L. RibasDeulofeu, S. De Palmas, C. A. Chen* (2014) First record of the scleractinian coral Psammocoraalbopicta from Korean waters. Marine Biodiversity, 44(2), 157-158.
    • S. Keshavmurthy, P.-J. Meng, J.-T. Wang, C.-Y. Kuo, S.-Y. Yang, C.-M. Hsu, C.-H. Gan, C.-F. Dai, C. A. Chen* (2014) Can resistant coral-Symbiodinium associations enable coral communities to survive climate change? A study of a site exposed to long-term hot water input. PeerJ, 2, e327.
    • M.-F. Lin, M. VisentiniKitahara, H. Luo, D. Tracey, J. Geller, H. Fukami, D. J. Miller* and C. A. Chen* (2014) Mitochondrial genome rearrangements in the Scleractinia / Corallimorpharia complex: implications for coral phylogeny. Genome Biology and Evolution, 6(5), 1086-1095.
    • M. Kitahara, M.-F. Lin S. Foret, G. Huttley, D. J. Miller, C. A. Chen* (2014) The“naked coral” hypothesis revisited – evidence for and against scleractinianmonophyly. PLoS One, 9(4), e94774.
    • T. Mezaki*, S. Keshavmurthy, C. A. Chen (2014) An old and massive colony of Pavonadecussata is sexually active at high latitude (32°N) in Japan. Coral Reefs, 33(1), 97.
    • V. Denis, M. Loubeyres, S. Doo, S. de Palmas, S. Keshavmurthy, H. J. Hsieh, C. A. Chen* (2014) Can benthic algae mediate larval behavior and settlement of the coral Acroporamuricata? Coral Reefs, 33(2), 431-440.
    • S. Woo, A. Lee, V. Denis, C. A. Chen, S. Yum (2014) Transcript response of soft coral (Scleronephthyagracillimum) on exposure to polycyclic aromatic hydrocarbons. Environmental Science and Pollution Research, 21(2), 901-910.
    • E. Slooten*, J. Y. Wang, S. Z. Dungan, K. A. Forney, S. K. Hung, T. A. Jefferson, K. N. Riehl, L. Rojas-Bracho, P. S. Ross, A. Wee, R. Winkler, S.-C.Yang and C A. Chen (2013) Impacts of fisheries on the Critically Endangered humpback dolphin Sousa chinensis population in the eastern Taiwan Strait. Endangered Species Research, 22, 99-114.
    • C.-M. Hsu, J.-T. Wang, C. A. Chen* (2013) Larval release and rapid settlement of the coral-killing sponge, Terpioshoshinota, at Green Island, Taiwan. Marine Biodiversity, 43(4), 259-260.
    • M. R. Rahmani, H. Rahimian, M. Ardalan, S. Keshavmurthy, S. Fontana, C. C. Wallace, C. A. Chen* (2013) Acropora distribution patterns in the northern and northeastern Persian Gulf. Zoological Studies, 52, 40.
    • M.-F. Lin, C. A. Chen*, D. J. Miller (2013 Asexual reproduction by marginal budding in the tropical corallimorpharian, Ricordeayuma (Corallimorpharia, Ricordeidae). Galaxea, 15 (2), 41-42.
    • S.-Y. V. Liu, C.-L. C. Chan, O. Lin, C.-S. Hu, C. A. Chen* (2013) DNA Barcoding of Shark Meats Identify Species Composition and CITES-Listed Species from the Markets in Taiwan. PLoS One, 8(11), e79373.
    • J. H. Pinzon, E. Sampayo, E. Cox, L. J. Chauka, C. A. Chen, C. R. Voolstra, T. C. LaJeunesse* (2013) Blind to morphology: genetics identifies several widespread ecologically common species and few endemics among Indo-Pacific cauliflower corals (Pocillopora, Scleractinia). Journal of Biogeography, 40(8), 1595-1608.
    • C. K.-C. Wen, K.-S. Chen, H. J. Hsieh, C.-M. Hsu, C. A.Chen* (2013) High coral cover and subsequent high fish richness on mature breakwaters in Taiwan. Marine Pollution Bulletin, 72(1), 55-63.
    • S. Keshavmurthy, S.-Y. Yang, A. Alamaru, Y.-Y. Chuang, M. Pichon, D. Obura, S. Fontana, S. De Palmas, F. Stefani, F. Benzoni, A. MacDonald, A. M. E. Noreen, C. Chen, C. C. Wallace, R. M. Pillay, V. Denis, A. Y. Amri, J. D. Reimer, T. Mezaki, C. Sheppard, Y. Loya, A. Abelson, M. S. Mohammed, A. C. Baker, P. G. Mostafavi, B. A. Suharsono, C. A. Chen* (2013) DNA barcoding reveals the coral 'laboratory-rat', Stylophorapistillata encompasses multiple identities. Scientific Reports, 3, 1520.
    • V. Denis, C. A. Chen*, J. I. Song, S. Woo (2013) Alveopora japonica beds thriving under kelp. Coral Reefs, 32(2), 503.
    • V. Denis, T. Mezaki, K. Tanaka, C.-Y. Kuo, S. del Palmas, S. Keshavmurthy, C. A. Chen* (2013) Coverage, diversity and functionality of a high latitude coral community (Tatsukushi, Shikoku Island, Japan). PLoS One, 8(1), e54330.
    • Y.-T. Lien, S. Keshavmurthy, Y. Nakano, S. Plathong, H. Huang, H. Fukami, Y. Yamashita, C. A. Chen* (2013) Host genetics and Symbiodinium D diversity in a stress-tolerant scleractinian coral, Oulastreacrispata, in the West Pacific. Marine Ecology Progress Series, 473, 163-177.
    • S. Fotana, S. Keshavmurthy, H. J. Hsieh, V. Denis, C. Y. Kuo, C. M. Hsui, C. A. Chen* (2012) Molecular evidence shows low species diversity of coral-associated hydroids in Acropora corals. PLoS One, 7(11), e50130.
    • J.-T. Wang, Y.-Y. Chen, K. S. Tew, P.-J. Meng, C. A. Chen (2012) Physiological and biochemical performances of menthol-induced aposymbioticcorals. PLoS One, 7(9), e46406.
    • C.-Y. Kuo, P.-J. Meng, P.-H. Ho, J.-T. Wang, J.-P. Chen, Y.-W. Chiu, H.-J Lin,Y.-C. Chang, T.-Y. Fan, A. H. Baird, C. A. Chen* (2012) Recurrent disturbances and the degradation of hard coral communities in Taiwan. PLoS One, 7(8), e44364.
    • S. Keshavmurthy, C.-H. Lan, C.-M. Hsui, P.-J. Meng, J.-T. Wang, C. A. Chen* (2012) Symbiont communities and host genetic structure of the brain coral Platygyraverweyi, at the outlet of a nuclear power plant and adjacent areas. Molecular Ecology, 21(17), 4393-4407.
    • M.-F. Lin, Marcelo VisentiniKitahara, Hiroyuki Tachikawa, Hironobu Fukami, David John Miller, C. A. Chen* (2012) Novel organization of the mitochondrial genome in the deep-sea coral, Madreporaoculata (Hexacorallia, Scleractinia, Oculinidae) and its taxonomic implications. Molecular Phylogenetics and Evolution, 65(1), 323-328.
    • J.-T. Wang, E. Hirose, C.-M. Hsu, Y.-Y. Chen, P.-J. Meng, C. A. Chen (2012) Coral-killing sponge, Terpioshoshinota, releases larvae harbouringcyanobacterial symbionts: an implication of dispersal. Zoological Studies, 51(3), 314-320.
    • S.-Y. Yang, S. Keshavmurthy, D. Obura, C. Shappard, S. Visram, C. A. Chen* (2012) Diversity and distribution of symbiodinium associated with seven common coral species in the Chagos Archipelago, central Indian Ocean. PLoS One, 7(5), e35836.
    • Y. A. Huang, S.-C. Huang, P.-J. Meng, H. J. Hsieh, C. A. Chen* (2012) Influence of seasonal monsoon winds on the water quality around a marine cage-culture zone in a semi-closed embayment in Taiwan. Marine Pollution Bulletin, 64(4), 851-860.
    • M.-F. Lin, M. Kitahara, H. Tachikawa, S. Keshavmurthy, C. A. Chen* (2012) A new unusual shallow-water species, Polycyathuschaishanensis sp. nov. (Scleractinia: Caryophylliidae), from Chaishan, Kaohsiung, Taiwan. Zoological Studies, 51(2), 213-221.
    • J. T. Wang, P. J. Meng, Y. Y. Chen, and C. A. Chen (2012) Determination of the thermal tolerance of Symbiodinium using the activation energy for inhibiting photosystem II activity. Zoological Studies, 51(2), 137-142.
    • J.-T. Wang, Y.-Y. Chen, P.-J. Meng, Y.-H. Sune, C.-M. Hsu, K.-Y. Wei, C. A. Chen (2012) Diverse interactions between corals and the coral-killing sponge, Terpioshoshinota (Suberitidae, Hadromerida). Zoological Studies, 51(2), 150-159.
    • S. Keshavmurthy, C.-M. Hsu, C.-Y. Kuo, V. Dennis, K.-L. J. Leung, S. Fronta, H. J. Hsieh, W.-S. Tsai, W.-C. Su, C. A. Chen* (2012) Larvae development of the fertilized “pseudo-gynodiecious” eggs in Galaxeafascicularis. Zoological Studies, 51(2), 143-149.
    • M. Pichon*, Y.-Y. Chuang, C. A. Chen* (2012) Pseudosiderastreaformosa sp. nov. (Cnidaria: Anthozoa: Scleractinia) a New Coral Species Endemic to Taiwan. Zoological Studies, 51(1), 93-98.
    • N. V. Wei, H. J. Hsieh, C.-F. Dai, C. C. Wallace, A. H. Baird, C. A. Chen* (2012) Reproductive Isolation among Acropora Species (Scleractinia: Acroporidae) in a Marginal Coral Assemblage. Zoological Studies, 51(1), 85-92.
    • Y. A. Huang, S.-C. Huang, P.-J. Meng, H. J. Hsieh, C. A. Chen* (2012) Changes in sedimentation, sediment characteristics, and benthic macrofaunal assemblages around marine cage culture under seasonal monsoon scales in a shallow-water bay in Taiwan. Journal of Experimental Marine Biology and Ecology, 422-423, 55-63.
    • Denis V, Leung JKL, Hsu CM, Hsieh HJ, Tsai WS, Chen CA* (2012) Dark survival of Oulastreacrispata. Galaxea: Journal of Coral Reefs Studies, 14(1), 117-118.
    • Sheppard, C. R. C., M. Ateweberhan, B. W. Bowen, P. Carr, C. A. Chen (2012) Reefs and islands of the Chagos Archipelago, Indian Ocean: why it is the world's largest no-take marine protected area. Aquatic Conservation-Marine and Freshwater Ecosystems, 22(2), 232-261.
    • C. R. C. Sheppard, M. Ateweberhan, B. W. Bowen, P. Carr, C. A. Chen, 20 authors. (2012) Reefs and islands of the Chagos Archipelago, Indian Ocean: why it is the world's largest no-take marine protected area. Aquatic Conservation-Marine and Freshwater Ecosystems, 22(2), 232-261.
    • H. J. Hsieh, K.-S. Chen Y. I. Lin, A. Baird, W.-S. Tsai, W.-C. Su, C. A. Chen* (2011) Establishment of a No-take Area (NTA) could not guarantee the preservation of coral Communities in Chinwan Inner Bay, Penghu, Taiwan. Zoological Studies, 50(4), 443-453.
    • C.-Y. Kuo, P.-J. Meng, P.-H. Ho, J.-T. Wang, J.-P. Chen, Y.-W. Chiu, H.-J Lin,Y.-C. Chang, T.-Y. Fan, C. A. Chen* (2011) Damage to the reefs of Siangjiao Bay marine protected area in Kenting National Park, Taiwan during Typhoon Morakot. Zoological Studies, 50(1), 85.
    • F. Stafani, F. Benzoni, S.-Y. Yang, M. Pichon, C. A. Chen (2011) Comparison of morphological and genetic analyses reveals cryptic divergence and morphological plasticity in Stylophora (Cnidaria, Scleractinia). Coral Reefs, 30(4), 1033-1049.
    • K.-S. Chen, H. J. Hsieh, S. Keshavmurthy, J. K. L. Leung, I.-T. Lien, Y. Nakano, S. Plathong, H Huang, C. A. Chen* (2011) Latitudinal gradient of morphological variation in zebra coral, Oulastreacrispata (Scleractinia, Faviidae) in the West Pacific. Zoological Studies, 50(1), 43-52.
    • Y.-C. A. Huang, H. J. Hsieh, S.-C. Huang, P.-J. Meng, Y.-S. Chen, K. Shashank, Y. Nozawa, C.L. A. Chen* (2011) Nutrient enrichment caused by marine cage culture and its influence on subtropical coral communities in turbid waters. Marine Ecology Progress Series, 423, 83-93.
    • J.-T. Wang, P.-J Meng, E. Sampayo, S.-L. Tang, C. A. Chen (2011) Photosystem II breakdown induced by reactive oxygen species (ROS) in the freshly-isolated Symbiodinium of Montipora (Scleractinia, Acropordiae). Marine Ecology Progress Series, 422, 51-62.
    • M.-F. Lin, K. S. Luzon, W. Y. Licuanan, M. C. Ablan-Lagman, C. A. Chen* (2011) Seventy-four universal primers for characterizing the complete mitochondrial genomes of scleractinian corals (Cnidaria, Anthozoa). Zoological Studies, 50(4), 513-524.
    • S.-Y. Sheu, S. R. Jiang, C. A. Chen, J. T. Wang, W. M. Chen (2010) Paracoccusstylophorae sp. nov., isolated from the reef-building coral Stylophorapistillata. International Journal of Systematic and Evolutionary Microbiology, 61(9), 2221-2226.
    • C.-P. Chen, C.-H. Tseng, C. A. Chen, S. L. Tang (2010) The dynamics of microbial partnerships in the coral Isoporapalifera. The ISME Journal, 5(4), 728-740.
    • S.-Y. Sheu, S. R. Jiang, C. A. Chen, J.-T. Wang , W.-M Chen (2010) Vibrio stylophorae sp. nov., isolated from the reef-building coral Stylophorapistillata. International Journal of Systematic and Evolutionary Microbiology, 61(9), 2180-2185.
    • M.-H. Chen, S. Y. Sheu, C. A. Chen, J. T. Wang, W. M. Chen (2010) Paracoccusisoporae sp. nov., isolated from the reef-building coral Isoporapalifera. International Journal of Systematic and Evolutionary Microbiology, 61(5), 1138-1143.
    • C.-S. Yang, M. H. Chen, A. B. Arun, C. A. Chen, J. T. Wang, W. M. Chen (2010) Endozoicomonasmontiporae sp. nov., isolated from the encrusting pore coral Montiporaaequituberculata. International Journal of Systematic and Evolutionary Microbiology 60(5), 1158-1162.
    • M.-H. Chen, S. Y. Sheu, C. A. Chen, J. T. Wang, W. M. Chen (2010) Shimiaisoporae sp. nov., isolated from the reef-building coral Isoporapalifera. International Journal of Systematic and Evolutionary Microbiology, 61(4), 823-827.
    • P.-C. Tang, C.-M. Hsu, C.-Y. Kuo, C. A. Chen* (2010) An unexpectedly high Acropora species diversity in the inlet of a nuclear power plant within Kenting National Park, southern Taiwan. Zoological Studies, 49(1), 71.
    • P.-C. Tang, N. V. Wei, C. C. Wallace, C. A. Chen* (2010) Comparative study of genetic utility of AAT and GT/CT microsatellites in staghorn coral, Acropora. Zoological Studies, 49(5), 657-668.
    • S. Visram, M-C Yang, R. Moothien Pillay, S. Said, O. Henriksson, M. Grahn, C. A. Chen (2010) Genetic connectivity and historical demography of the blue barred parrotfish (Scarusghobban) in the Western Indian Ocean. Marine Biology, 157(7), 1475-1487.
    • M. J. Hong, Y. T. Yu, C. A. Chen, P. W. Chiang, S. L. Tang (2009) Influence of Species Specificity and Other Factors on Bacteria Associated with the Coral Stylophorapistillata in Taiwan,. Applied and Environmental Microbiology, 75(24), 7797-7806.
    • M. J. Yang, H.-L. Hsieh, C.-P. Chen, C. A. Chen* (2009) Is a Living Fossil about to Go Locally Extinct? No Mitochondrial Genetic Variation in Horseshoe Crab Juveniles Tachypleustridentatus at Haomeiliao Nature Reserve, Budai, Taiwan. Zoological Studies, 48(6), 737.
    • Sheu, S.Y., T. F. Chiu, J. H. Chou, D. S. Sheu, A. B. Arun, C. C. Young, C. A. Chen, J. T. Wang, W. M. Chen (2009) Andreprevotia lacus spnov., isolated from a fish-culture pond. International Journal of Systematic and Evolutionary Microbiology, 59, 2482-2485.
    • S. Y. Sheu, , T. F. Chiu, N. T. Cho, J. H. Chou, D. S. Sheu, A. B. Arun, C. C. Young, C. A. Chen, J. T. Wang, W. M. Chen (2009) Flectobacillusroseusspnov., isolated from freshwater in Taiwan. International Journal of Systematic and Evolutionary Microbiology, 59, 2546-2551.
    • J. H. Chou, Y. J. Chou, A. B. Arun, C. C. Young, C. A. Chen, J. T. Wang, W. M. Chen (2009) Vogesella lacus spnov., isolated from a soft-shell turtle culture pond. International Journal of Systematic and Evolutionary Microbiology, 59, 2629-2632.
    • K. Soong, S. L. Yang, C. A. Chen (2009) A Novel Dispersal Mechanism of a Coral-Threatening Sponge, Terpioshoshinota (Suberitidae, Porifera). Zoological Studies, 48(5), 596-596.
    • L. M. Tsang, B.K.K. Chan, F. L. Shih, K. H. Chu, C. A.Chen (2009) Host-associated speciation in the coral barnacle Wanellamilleporae (Cirripedia: Pyrgomatidae) inhabiting the Millepora coral. Molecular Ecology, 18(7), 1463-1475.
    • I. P. Chen, C. Y. Chung, C. Y. Chiou, J. H. Hsui, N. V. Wei, C. C. Wallace, P. Muir, H. Wu, C. A. Chen* (2009) Comparative analyses of coding and noncoding DNA regions indicate that Acroporaspp (Anthozoa, Scleractina) possess a similar evolutionary tempo of nuclear vs. mitochondrial genomes in plants. Marine Biotechnology, 11(1), 141-152.)
    • C. Chen, C.-Y. Chiou, C.-F. Dai, C. A Chen* (2008) Unique mitogenome in the scleractinian family Pocilloporidae (Scleractinia, Astrocoeniia). Marine Biotechnology, DOI: 10.1007/s10126-008-9093-x
    • C. Chen, C.-F. Dai, C.-Y. Chiou, S. Plathong, C. A Chen* (2008) The Complete mitochondrial genomes of needle corals, Seriatoporaspp (Scleractinia, Pocilloporidae): idiosyncratic atp8 gene, duplicated tRNA-Trp, and the hypervariable regions for species phylogenies and recently diverged populations. Molecular Phylogenetics and Evolution, 46, 19-33.
    • H. Fukami, C. A. Chen, A. F. Budd, A. Collins, C. C. Wallace, Y.-Y. Chuang, C. Chen, C.-F. Dai, K. Iwao, C. Sheppard, N. Knowlton (2008) Mitochondrial and nuclear gene suggest that stony corals are monophyletic but most of coral families are not. PLoS ONE, 3(9), e3222. doi:10.1371/journal.pone.0003222
    • H. J. Hsieh, I-L. Shen, M.-S. Jeng, W.-S. Tsai, W.-C. Su, C. A. Chen* (2008) Tropical fish killed by the cold. Coral Reefs. DOI: 10.1007/s00338-008-0378-3
    • C. Chen, C.-Y. Chiou, C.-F. Dai, C. A Chen* (2008) Unique mitogenome in the scleractinian family Pocilloporidae (Scleractinia, Astrocoeniia). Marine Biotechnology, DOI: 10.1007/s10126-008-9093-x
    • C.-Y. Chiou, I-P. Chen, C.-H. Chen, N. V. Wei, H. Wu, C. C. Wallace, C. A. Chen* (2008) Analysis of Acroporamuricata Calmodulin (CaM) indicates scleractinian coral possess the ancestral exon/intron organization of eumetazoanCaM gene. Journal of Molecular Evolution, DOI: 10.1007/s00239-008-9084-6
    • C. Chen, C.-F. Dai, C.-Y. Chiou, S. Plathong, C. A Chen* (2008) The Complete mitochondrial genomes of needle corals, Seriatoporaspp (Scleractinia, Pocilloporidae): idiosyncratic atp8 gene, duplicated tRNA-Trp, and the hypervariable regions for species phylogenies and recently diverged populations. Molecular Phylogenetics and Evolution, 46, 19-33.
    • C. Chen, K. Soong, C. A. Chen* (2008) The smallest oocytes in the broadcasting actiniarians and unique lunar cycle of reproduction in a unisexual population of sea anemone, Aiptasiapuchella. Zoological Studies, 47, 37-45.
    • H. J. Hsieh, C.-M. Hsu, C.-F. Dai, M.-S. Jeng, W.-S. Tsai, C. A. Chen* (2007) Monospecific stand of Turbinariamesenterina in Pescadores: Ecological and conservational significance. Zoological Studies, 47, 591.
    • M.-H. Liao, S.-L. Tang, C.-M. Hsu, K.-C. Wen, H. Wu, W.-M. Chen, J.-T. Wang, P.-J. Meng, W.-H. Twan, C.-F. Dai, K. Soong, C. A. Chen* (2007) The “Black Disease” of reef-building corals at Green Island, Taiwan ---Outbreak of a cyanobacteriosponge, Terpioshoshinota (Suberitidae, Hadromerida). Zoological Studies, 46(4), 520.
    • D. Obura, Y.-Y. Chuang, M. Olendo, N Amiyo, J. Church, C. A. Chen* (2007) Relict Siderastreasavignyana in Kiunga National Marine Reserve, Kenya. Zoological Studies, 46(5), 427.
    • H. Fukami, C. A. Chen, C.-Y. Chiou, N. Knowlton (2007) Novel Group I intron encoding the predicted homing endonuclease of the mitochondrial cox1 gene of the scleractinian corals: Horizontal transfer from a fungi donor. Journal of Molecular Evolution, 64(5), 591-600.
    • C. C. Wallace, C. A. Chen, H. Fukami, P. Mur (2007) Recognition of separate genera within the large coral genus Acropora based on new morphological, reproductive and genetic evidence from A. togianensis, and elevation of the subgenus IsoporaStuder 1878 to genus (Scleractinia: Astrocoeniidae, Acroporidae). Coral Reefs, 26(2), 231-239.
    • M.-C. Yang, C. A. Chen, H.-L.Hsieh, C.-P. Chen (2007) Population subdivision the tri-spine horseshoe crab, Tachypleustridentatus, over a relatively small range in Taiwan Strait revealed by the mitochondrial AT-rich region. Zoological Studies, 24, 219-224
    • K.-C. Wen, C.-M. Hsui, K.-S. Chen, M.-H. Liao, C.-P. Chen, C. A. Chen* (2007) Unexpected coral diversity on breakwaters: potential refuges for depleting Coral Reefs. Coral Reefs, 26(1), 127-127.
    • Y.-T. Lien, Y. Nakano, S. Plathong, H. Fukami, J.-T. Wang, C. A. Chen* (2007) Occurrence of the putatively heat-tolerant Symbiodiniumphylotype D in high-latitudinal marginal coral communities. Coral Reefs, 26, 35-44.
    • H. J. Hsieh, C. A. Chen, C.-F. Dai, W.-H. Ou, W.-S. Tsai, W.-C. Su (2007) From the drawing board to the field: An example for establishing an MPA, in Penghu, Taiwan. Aquatic Conservation-Marine and Freshwater Ecosystems, 17(6), 619-635.
    • K.-C. Wen, C.-M. Hsui, K.-S. Chen, M.-H. Liao, C.-P. Chen, C. A. Chen* (2006) Unexpected coral diversity on breakwaters: potential refuges for depleting Coral Reefs. Coral Reefs, 26(1), 127-127.
    • Y.-T. Lien, Y. Nakano, S. Plathong, H. Fukami, J.-T. Wang, C. A. Chen*(2006) Occurrence of the putatively heat-tolerant Symbiodinium phylotype D in high-latitudinal marginal coral communities. Coral Reefs, 26(1), 35–44.
    • M.-C. Yang, C. A. Chen, H.-L.Hsieh, C.-P. Chen (2006) Population subdivision the tri-spine horseshoe crab, Tachypleus tridentatus, over a relatively small range in Taiwan Strait revealed by the mitochondrial AT-rich region. Zoological Science, 24, 219-224.
    • N. V. Wei, C. C. Wallace, C.-F. Dai, , K. R. Moothien Pillay, C. A. Chen* (2006) Analyses of the ribosomal internal transcribed spacers (ITS) and 5.8S gene indicate that extremely high rDNA heterogeneity is a unique feature in the scleractinian coral genus Acropora (Cnidaria, Scleractinian, Acroporidae). Zoological Studies, 45, 404-418.
    • S. Plathong, A. Baird, C. A. Chen*, T. Chanmethakul, V. Suwonno, P. Buahpet, S. Soontornpitakkool (2006) Day-time gamete-releasing from the reef-building coral, Pavona sp., in the Gulf of Thailand. Coral Reefs, 25, 72.
    • C.-P. Lu, C. A. Chen, C.-F. Hui, T.-D. Tzeng, S.-Y. Yeh (2006) Population genetic structure of the swordfish, Xiphias gladius, in the Indian Ocean and West Pacific inferred from the complete DNA sequence of the mitochondrial control region. Zoological Studies, 45, 269-279.
    • H.-T. Shih, H.-C. Hung, C. D. Schubart, C. A. Chen, H.-W. Chang (2006) Intraspecific genetic diversity of the endemic freshwater crab Candidiopotamon rathbunae (Decapoda, Brachyura, Potamidae) reflects five million years of geological history of Taiwan. Journal of Biogeography, 33, 980-989.
    • K. R. M. Pillay, T. Asahida, C. A. Chen, H. Terashima, H. Ida (2006) ITS ribosomal DNA distinctions and population genetic structure of two sympatric species of Pavona (Cnidaria: Scleractinia) from Mauritius. Zoological Studies, 45, 132-141.
    • C.-C. Tseng, C. C.Wallace, C. A. Chen* (2005) Mitogenomic analysis of Montipora cactus and Anacropora matthai (Cnidaria, Scleractinia, Acroporidae) indicates an unequal rate of mitochondrial evolution among Acroporidae corals. Coral Reefs, 24, 502-508.
    • C. A. Chen*, J.-T. Wang, L.-S. Fang, Y.-W. Yang (2005) Fluctuating algal symbiont communities in Acropora palifera (Cnidaria, Scleractinia) from Taiwan. Marine Ecological Progress Series, 295, 113-121.
    • Z.H. Forsman, H. Guzman, C. A. Chen, G.E. Fox, G.M. Wellington (2005) An ITS region phylogeny of the coral genus Siderastrea reveals the likely origin of Siderastrea glynni. Coral Reefs, 24, 343-347.
    • C. A. Chen*, Y.-W. Yang, N. V Wei, W-S Tsai, L.-S. Fang (2005) Symbiont diversity in the scleracinian corals from tropical reefs and non-reefal communities in Taiwan. Coral Reefs, 24, 11-22.
    • C. A. Chen, M. Ablan, T.-C. Hsu, J. MacManus, A. Cabanban, V. S. Tuan, J. Bell, K.-T. Shao (2004) Population Structure and Genetic Variability of Six Bar Wrasse (Thallasoma hardwicki) in Northern South China Sea Revealed by Mitochondrial Control Region Sequences. Marine Biotechnology, 6, 312-326.
    • C. A. Chen* C.-C. Chang, N. V. Wei, C.-H. Chen, I-T. Lein, H.-E Lin, C.F. Dai, C. C. Wallace (2004) Secondary structure and phylogenetic utility of the ribosomal internal transcribed spacer 2 in the scleractinian corals. Zoological Studies, 43, 759-771
    • C. A. Chen* and C.-F. Dai (2004) Local phase shift from Acropora-dominant to Condylactisdominant community in the Tiao-Shi Reef, Kenting National Park, southern Taiwan. Coral Reefs, 23, 508.
    • C. A. Chen, M. Ablan, T.-C. Hsu, J. MacManus, A. Cabanban, V.S. Tuan, J. Bell, K.-T. Shao (2004) Variable Numbers of Tandem Repeats (VNTRs), Heteroplasmy, and Sequence Variation of the Mitochondrial Control Region in the Three-spot Dascyllus, Dascyllus trimaculatus (Perciformes: Pomacentridae). Zoological Studies, 43, 803-812.
    • Y.-T. Hung, C. A. Chen, W.-J. Wu, C. J. Shih (2004) Phylogenetic utility of the ribosomal internal transcribed spacer 2 in Strumigenys spp. (Hymenoptera: Formicidae). Molecular Phylogenetics and Evolution, 32, 407-415.
    • H. Fukami, A.F. Budd, G. Paulay, A. Sole-Cava, C. A. Chen, K. Iwao, N. Knowlton (2004) Conventional taxonomy obscures deep divergence between Pacific and Atlantic corals. Nature, 427, 832-835.
    • C. A. Chen*, K. K. Lam, Y. Nakano, W. S. Tsai (2003) A stable association of a stress-tolerant zooxanthellae, Symbiodinium clade D, with the low-temperature tolerant coral, Oulastrea crispata, (Scleractinia, Faviidae). Zoological Studies, 42, 540-550.
    • K. Soong, M.-H. Chen, C. A. Chen, C.-F. Dai, T.-Y. Fan, J.-J. Li, H Fan, K.-M. Juo, H. Hsieh (2003) Spatial and temporal variation of coral recruitment in Taiwan. Coral Reefs, 23, 224-228.
    • J. K. Wolstenholme, C. C. Wallace, C. A. Chen (2003) Species boundaries within the Acropora humilis species group (Cnidaria, Scleractinia): a morphological and molecular interpretation of evolution. Coral Reefs, 23, 155-161.
    • S.-P.L. Hwang, C. A. Chen, M.-Y. Peng, C.-P. Chen (2003) Evolutionary conservation of the bone morphogenetic protein 2/4 gene between diploblastic and triploblastic metazoans. Zoological Studies, 42, 227-234.
    • Y.-W. Chiu, H.-C. Chen, S.-T. Lee, and C. A. Chen* (2002) Morphometric analyses of shell and operculum variation of viviparid snail, Cipangopaludina chinensis, in Taiwan. Zoological Studies, 41, 321-331.
    • C. A. Chen*, N. V. Wei, C.-F. Dai (2002) Genotyping the clonal population structure of a gorgonian coral, Junceella fragilis (Anthozoa, Octocorallia, Ellisellidae) from Lanyu, Taiwan, using simple sequence repeats in the ribosomal Intergenic Spacer. Zoological Studies, 41, 295-302.
    • C. A. Chen*, C. C. Wallace, J. Wolstenholme (2002) Analysis of mitochondrial 12S RNA gene supports a two-clade hypothesis of the evolutionary history of scleractinian corals. Molecular Phylogenetics and Evolution, 23, 137-149.
    • C. A. Chen, C.-P. Chen, T.-Y. Fan, J.-K. Yu, H.-L. Hsieh (2002) Nucleotide sequences of the ribosomal internal transcribed spacers and its utility in distinguishing closely related Perinereis polychaetes (Annelida, Polychaetea, Nereididae). Marine Biotechnology, 4, 17-29.
    • S.-M. Lin, C. A. Chen, K.-Y. Lue (2002) Molecular phylogeny and biogeography of the grass lizards genus Takydromus (Reptilia: Lacertidae) of east Asia. Molecular Phylogenetics and Evolution, 22, 276-288.
    • L.-J. Shih, C. A. Chen, C.-P. Chen, and S.-P. L. Hwang (2002) Identification and characterization of bone morphogenetic proten 2/4 gene from the startfish Archacter typicus. Comp Biochem Physiol B Biochem Mol Biol, 131, 143-151.
  • 教學:
      海洋分子生態與演化
      珊瑚生物學文獻選讀

  • 學生論文指導:
      博士班: 楊明哲、黃元照、莊曜陽
      碩士班:許嘉閔、許嘉合、廖敏惠、林梅芳